Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:58134701-58675117

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40056 3 58089600 to 58162350 72750 + lncRNA gene predicted gene, 40056
4921539H07Rik 3 58117053 to 58167616 50563 + lincRNA gene RIKEN cDNA 4921539H07 gene
1700007F19Rik 3 58141707 to 58163807 22100 - lincRNA gene RIKEN cDNA 1700007F19 gene
Tssr33345 3 58153288 to 58153294 6 - TSS region transcription start site region 33345
Tssr33346 3 58163786 to 58163832 46 - TSS region transcription start site region 33346
Gm40057 3 58211919 to 58213371 1452 + lncRNA gene predicted gene, 40057
Gm26166 3 58290251 to 58290357 106 - snRNA gene predicted gene, 26166
Gm32847 3 58301858 to 58317618 15760 + lncRNA gene predicted gene, 32847
Gm43730 3 58314939 to 58315310 371 - pseudogene predicted gene 43730
Tssr33347 3 58372440 to 58372470 30 - TSS region transcription start site region 33347
Gm20128 3 58404701 to 58405117 416 + pseudogene predicted gene, 20128
Cpgi13200 3 58414323 to 58417364 3041 CpG island CpG island 13200
Tssr29198 3 58414698 to 58414739 41 + TSS region transcription start site region 29198
Tssr29199 3 58414741 to 58414771 30 + TSS region transcription start site region 29199
Tssr29200 3 58414778 to 58414794 16 + TSS region transcription start site region 29200
Tssr29201 3 58414813 to 58414829 16 + TSS region transcription start site region 29201
Tssr29202 3 58415316 to 58415324 8 + TSS region transcription start site region 29202
Tsc22d2 3 58415536 to 58466787 51251 + protein coding gene TSC22 domain family, member 2
Gdap9 3 58432681 to 58433014 333 unclassified gene ganglioside-induced differentiation-associated-protein 9
Tssr29203 3 58461116 to 58461120 4 + TSS region transcription start site region 29203
Tssr29204 3 58502180 to 58502185 5 + TSS region transcription start site region 29204
Tssr29205 3 58517488 to 58517501 13 + TSS region transcription start site region 29205
Tssr29206 3 58517537 to 58517546 9 + TSS region transcription start site region 29206
Serp1 3 58521969 to 58525884 3915 - protein coding gene stress-associated endoplasmic reticulum protein 1
Tssr33348 3 58522393 to 58522429 36 - TSS region transcription start site region 33348
Cpgi13201 3 58525052 to 58526272 1220 CpG island CpG island 13201
Tssr29207 3 58525113 to 58525128 15 + TSS region transcription start site region 29207
Tssr33349 3 58525113 to 58525160 47 - TSS region transcription start site region 33349
Tssr33350 3 58525717 to 58525728 11 - TSS region transcription start site region 33350
Tssr886 3 58525732 to 58525737 5 - TSS region transcription start site region 886
Tssr33351 3 58525742 to 58525761 19 - TSS region transcription start site region 33351
Tssr33352 3 58525768 to 58525788 20 - TSS region transcription start site region 33352
Tssr29208 3 58525815 to 58525844 29 + TSS region transcription start site region 29208
Eif2a 3 58525821 to 58557501 31680 + protein coding gene eukaryotic translation initiation factor 2A
Tssr33353 3 58525867 to 58525872 5 - TSS region transcription start site region 33353
Tssr33354 3 58525893 to 58525897 4 - TSS region transcription start site region 33354
Tssr29209 3 58526008 to 58526010 2 + TSS region transcription start site region 29209
Tssr29210 3 58526033 to 58526061 28 + TSS region transcription start site region 29210
6720482G16Rik 3 58526930 to 58528121 1191 + unclassified gene RIKEN cDNA 6720482G16 gene
Tssr29211 3 58539551 to 58539566 15 + TSS region transcription start site region 29211
Tssr29212 3 58548893 to 58548912 19 + TSS region transcription start site region 29212
Cpgi13202 3 58576491 to 58577508 1017 CpG island CpG island 13202
Tssr33355 3 58576552 to 58576582 30 - TSS region transcription start site region 33355
Selenot 3 58576636 to 58593133 16497 + protein coding gene selenoprotein T
Tssr29213 3 58576652 to 58576717 65 + TSS region transcription start site region 29213
Tssr29214 3 58576724 to 58576736 12 + TSS region transcription start site region 29214
Tssr33356 3 58577272 to 58577285 13 - TSS region transcription start site region 33356
Tssr33357 3 58577377 to 58577420 43 - TSS region transcription start site region 33357
Tssr33358 3 58577698 to 58577726 28 - TSS region transcription start site region 33358
Tssr33359 3 58577729 to 58577739 10 - TSS region transcription start site region 33359
Tssr29215 3 58591297 to 58591316 19 + TSS region transcription start site region 29215
Tssr29216 3 58595715 to 58595719 4 + TSS region transcription start site region 29216
D3Mit173 3 58597713 to 58597833 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 173
Erich6 3 58616300 to 58637207 20907 - protein coding gene glutamate rich 6
Tssr33360 3 58621211 to 58621214 3 - TSS region transcription start site region 33360
Tssr33361 3 58622809 to 58622810 1 - TSS region transcription start site region 33361
Cpgi13203 3 58636482 to 58637266 784 CpG island CpG island 13203
Gm46806 3 58636713 to 58637492 779 + lncRNA gene predicted gene, 46806
Tssr33362 3 58637174 to 58637179 5 - TSS region transcription start site region 33362
Tssr33363 3 58637184 to 58637198 14 - TSS region transcription start site region 33363
Tssr33364 3 58637201 to 58637221 20 - TSS region transcription start site region 33364
Gm8234 3 58652053 to 58653159 1106 + pseudogene predicted gene 8234
AU022133 3 58665470 to 58666566 1096 - pseudogene expressed sequence AU022133
Cpgi13204 3 58666418 to 58666638 220 CpG island CpG island 13204
Siah2 3 58674938 to 58692400 17462 - protein coding gene siah E3 ubiquitin protein ligase 2