Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:57336609-57896722

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr33320 3 57340967 to 57340971 4 - TSS region transcription start site region 33320
Tssr29182 3 57362241 to 57362252 11 + TSS region transcription start site region 29182
Gm5276 3 57362388 to 57363434 1046 + pseudogene predicted gene 5276
Gm32367 3 57379295 to 57394555 15260 - lncRNA gene predicted gene, 32367
Tssr884 3 57387325 to 57387343 18 + TSS region transcription start site region 884
Tssr33321 3 57387711 to 57387734 23 - TSS region transcription start site region 33321
Tssr33322 3 57387739 to 57387750 11 - TSS region transcription start site region 33322
Tssr33323 3 57387771 to 57387788 17 - TSS region transcription start site region 33323
Tssr885 3 57413901 to 57413909 8 + TSS region transcription start site region 885
Tm4sf4 3 57425410 to 57441677 16267 + protein coding gene transmembrane 4 superfamily member 4
Tssr29183 3 57425434 to 57425452 18 + TSS region transcription start site region 29183
Tssr29184 3 57425645 to 57425660 15 + TSS region transcription start site region 29184
Tssr29185 3 57433771 to 57433803 32 + TSS region transcription start site region 29185
Tssr29186 3 57441285 to 57441288 3 + TSS region transcription start site region 29186
Tssr29187 3 57441368 to 57441371 3 + TSS region transcription start site region 29187
D3Mit185 3 57442643 to 57442791 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 185
Wwtr1 3 57455649 to 57575910 120261 - protein coding gene WW domain containing transcription regulator 1
D3Mit170 3 57475420 to 57475523 103 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 170
Tssr33324 3 57501761 to 57501770 9 - TSS region transcription start site region 33324
Tssr33325 3 57501775 to 57501802 27 - TSS region transcription start site region 33325
Gm16016 3 57528232 to 57528781 549 + pseudogene predicted gene 16016
Tssr33326 3 57542761 to 57542762 1 - TSS region transcription start site region 33326
D3Mit68 3 57550033 to 57550207 174 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 68
Tssr33327 3 57555008 to 57555012 4 - TSS region transcription start site region 33327
D3Mit172 3 57574643 to 57574795 152 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 172
Cpgi13196 3 57574666 to 57576619 1953 CpG island CpG island 13196
Tssr33328 3 57575760 to 57575836 76 - TSS region transcription start site region 33328
Tssr33329 3 57575844 to 57575849 5 - TSS region transcription start site region 33329
Tssr33330 3 57575855 to 57575864 9 - TSS region transcription start site region 33330
Tssr33331 3 57575907 to 57575912 5 - TSS region transcription start site region 33331
Tssr33332 3 57576438 to 57576445 7 - TSS region transcription start site region 33332
Tssr33333 3 57576447 to 57576452 5 - TSS region transcription start site region 33333
Tssr33334 3 57576455 to 57576469 14 - TSS region transcription start site region 33334
Tssr33335 3 57576485 to 57576494 9 - TSS region transcription start site region 33335
Gm26671 3 57612697 to 57625824 13127 - lincRNA gene predicted gene, 26671
Mir6377 3 57616609 to 57616722 113 + miRNA gene microRNA 6377
Gm43437 3 57636883 to 57640837 3954 - unclassified gene predicted gene 43437
Gm46805 3 57637677 to 57640727 3050 + lncRNA gene predicted gene, 46805
Commd2 3 57644349 to 57651684 7335 - protein coding gene COMM domain containing 2
Cpgi13197 3 57651333 to 57651851 518 CpG island CpG island 13197
Tssr33336 3 57651667 to 57651727 60 - TSS region transcription start site region 33336
BB187690 3 57654404 to 57655579 1175 - unclassified gene expressed sequence BB187690
Ankub1 3 57667422 to 57692537 25115 - protein coding gene ankrin repeat and ubiquitin domain containing 1
Tssr33337 3 57692527 to 57692549 22 - TSS region transcription start site region 33337
Gm43098 3 57696180 to 57697476 1296 - unclassified gene predicted gene 43098
Gm6394 3 57717813 to 57718289 476 - pseudogene predicted gene 6394
Tssr33338 3 57718303 to 57718320 17 - TSS region transcription start site region 33338
Cpgi13198 3 57735523 to 57736454 931 CpG island CpG island 13198
Tssr29188 3 57736056 to 57736128 72 + TSS region transcription start site region 29188
Rnf13 3 57736062 to 57835233 99171 + protein coding gene ring finger protein 13
Gm9645 3 57765864 to 57766655 791 - pseudogene predicted gene 9645
Tssr29189 3 57779453 to 57779468 15 + TSS region transcription start site region 29189
Tssr29190 3 57796197 to 57796217 20 + TSS region transcription start site region 29190
Tssr29191 3 57807017 to 57807031 14 + TSS region transcription start site region 29191
Gm17951 3 57809762 to 57810257 495 - pseudogene predicted gene, 17951
D530035G10Rik 3 57821585 to 57822402 817 unclassified gene RIKEN cDNA D530035G10 gene
Tssr29192 3 57833852 to 57833882 30 + TSS region transcription start site region 29192
Pfn2 3 57841895 to 57847757 5862 - protein coding gene profilin 2
Tssr33339 3 57842636 to 57842652 16 - TSS region transcription start site region 33339
Cpgi13199 3 57846836 to 57848273 1437 CpG island CpG island 13199
Tssr33340 3 57847478 to 57847610 132 - TSS region transcription start site region 33340
Tssr33341 3 57847690 to 57847720 30 - TSS region transcription start site region 33341
Tssr33342 3 57847724 to 57847835 111 - TSS region transcription start site region 33342
Tssr33343 3 57848080 to 57848098 18 - TSS region transcription start site region 33343