Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:55182396-55550785

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13186 3 55181909 to 55182558 649 CpG island CpG island 13186
Sohlh2 3 55182044 to 55209957 27913 + protein coding gene spermatogenesis and oogenesis specific basic helix-loop-helix 2
Cpgi13187 3 55242337 to 55243006 669 CpG island CpG island 13187
Dclk1 3 55242369 to 55539068 296699 + protein coding gene doublecortin-like kinase 1
Tssr29154 3 55242530 to 55242555 25 + TSS region transcription start site region 29154
Tssr29155 3 55242561 to 55242579 18 + TSS region transcription start site region 29155
Tssr29156 3 55242586 to 55242645 59 + TSS region transcription start site region 29156
Tssr29157 3 55242653 to 55242664 11 + TSS region transcription start site region 29157
Tssr29158 3 55247065 to 55247084 19 + TSS region transcription start site region 29158
Tssr29159 3 55247103 to 55247150 47 + TSS region transcription start site region 29159
Tssr29160 3 55281249 to 55281266 17 + TSS region transcription start site region 29160
9430012M22Rik 3 55290943 to 55291944 1001 unclassified gene RIKEN cDNA 9430012M22 gene
Gm25132 3 55305317 to 55305423 106 + snRNA gene predicted gene, 25132
Tssr29161 3 55324388 to 55324391 3 + TSS region transcription start site region 29161
Gm19817 3 55330841 to 55332972 2131 + unclassified gene predicted gene, 19817
Gm40051 3 55352396 to 55380785 28389 - lncRNA gene predicted gene, 40051
Tssr29162 3 55371985 to 55372009 24 + TSS region transcription start site region 29162
Gm42609 3 55377457 to 55403122 25665 - antisense lncRNA gene predicted gene 42609
Gm9831 3 55391809 to 55404199 12390 - protein coding gene predicted gene 9831
Tssr33296 3 55403191 to 55403210 19 - TSS region transcription start site region 33296
Tssr33297 3 55403211 to 55403225 14 - TSS region transcription start site region 33297
D3Mit208 3 55429825 to 55429970 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 208
Cpgi13188 3 55461724 to 55461947 223 CpG island CpG island 13188
Tssr29163 3 55461858 to 55461863 5 + TSS region transcription start site region 29163
Tssr29164 3 55461867 to 55461961 94 + TSS region transcription start site region 29164
Tssr29165 3 55461963 to 55461977 14 + TSS region transcription start site region 29165
Gm21954 3 55461985 to 55472210 10225 - protein coding gene predicted gene, 21954
Tssr29166 3 55467193 to 55467197 4 + TSS region transcription start site region 29166
Gm31443 3 55476089 to 55481618 5529 - lncRNA gene predicted gene, 31443
Gm42607 3 55483788 to 55487180 3392 + unclassified gene predicted gene 42607
Tssr29167 3 55503152 to 55503153 1 + TSS region transcription start site region 29167
Tssr881 3 55516357 to 55516398 41 + TSS region transcription start site region 881
Gm42608 3 55517569 to 55519586 2017 + unclassified gene predicted gene 42608
Tssr29168 3 55527875 to 55527886 11 + TSS region transcription start site region 29168
Tssr29169 3 55533778 to 55533795 17 + TSS region transcription start site region 29169
Tssr29170 3 55533992 to 55533995 3 + TSS region transcription start site region 29170
Tssr29171 3 55537176 to 55537185 9 + TSS region transcription start site region 29171
Tssr33298 3 55539969 to 55539972 3 - TSS region transcription start site region 33298
Gm31796 3 55540450 to 55543382 2932 - lncRNA gene predicted gene, 31796
Cpgi13189 3 55542760 to 55542976 216 CpG island CpG island 13189
Gm25404 3 55548446 to 55548552 106 + snRNA gene predicted gene, 25404