Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:55112337-55373006

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13184 3 55111915 to 55112724 809 CpG island CpG island 13184
Spg20 3 55112108 to 55137322 25214 + protein coding gene spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
Tssr29148 3 55112354 to 55112376 22 + TSS region transcription start site region 29148
Tssr29149 3 55112377 to 55112405 28 + TSS region transcription start site region 29149
Tssr29150 3 55116174 to 55116195 21 + TSS region transcription start site region 29150
Cpgi13185 3 55117285 to 55117583 298 CpG island CpG island 13185
Ccdc169 3 55137339 to 55172935 35596 + protein coding gene coiled-coil domain containing 169
Tssr29151 3 55140033 to 55140049 16 + TSS region transcription start site region 29151
Gm22029 3 55162314 to 55162434 120 - miRNA gene predicted gene, 22029
Cpgi13186 3 55181909 to 55182558 649 CpG island CpG island 13186
Tssr29152 3 55182007 to 55182012 5 + TSS region transcription start site region 29152
Tssr29153 3 55182024 to 55182059 35 + TSS region transcription start site region 29153
Sohlh2 3 55182044 to 55209957 27913 + protein coding gene spermatogenesis and oogenesis specific basic helix-loop-helix 2
Cpgi13187 3 55242337 to 55243006 669 CpG island CpG island 13187
Dclk1 3 55242369 to 55539068 296699 + protein coding gene doublecortin-like kinase 1
Tssr29154 3 55242530 to 55242555 25 + TSS region transcription start site region 29154
Tssr29155 3 55242561 to 55242579 18 + TSS region transcription start site region 29155
Tssr29156 3 55242586 to 55242645 59 + TSS region transcription start site region 29156
Tssr29157 3 55242653 to 55242664 11 + TSS region transcription start site region 29157
Tssr29158 3 55247065 to 55247084 19 + TSS region transcription start site region 29158
Tssr29159 3 55247103 to 55247150 47 + TSS region transcription start site region 29159
Tssr29160 3 55281249 to 55281266 17 + TSS region transcription start site region 29160
9430012M22Rik 3 55290943 to 55291944 1001 unclassified gene RIKEN cDNA 9430012M22 gene
Gm25132 3 55305317 to 55305423 106 + snRNA gene predicted gene, 25132
Tssr29161 3 55324388 to 55324391 3 + TSS region transcription start site region 29161
Gm19817 3 55330841 to 55332972 2131 + unclassified gene predicted gene, 19817
Gm40051 3 55352396 to 55380785 28389 - lncRNA gene predicted gene, 40051
Tssr29162 3 55371985 to 55372009 24 + TSS region transcription start site region 29162