Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:55037339-55272935

33 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Ccna1	3	55045469 to 55055330	9861	-	protein coding gene	cyclin A1
Cpgi13183	3	55054736 to 55055913	1177		CpG island	CpG island 13183
Tssr33291	3	55054983 to 55055022	39	-	TSS region	transcription start site region 33291
Tssr33292	3	55055038 to 55055051	13	-	TSS region	transcription start site region 33292
Tssr33293	3	55055088 to 55055127	39	-	TSS region	transcription start site region 33293
Tssr29145	3	55055217 to 55055236	19	+	TSS region	transcription start site region 29145
Tssr29146	3	55055237 to 55055269	32	+	TSS region	transcription start site region 29146
4931419H13Rik	3	55055242 to 55084002	28760	+	antisense lncRNA gene	RIKEN cDNA 4931419H13 gene
Tssr33294	3	55055478 to 55055491	13	-	TSS region	transcription start site region 33294
Tssr33295	3	55055501 to 55055519	18	-	TSS region	transcription start site region 33295
Gm43555	3	55057347 to 55057656	309	-	pseudogene	predicted gene 43555
Cpgi13184	3	55111915 to 55112724	809		CpG island	CpG island 13184
Tssr29147	3	55112080 to 55112171	91	+	TSS region	transcription start site region 29147
Spg20	3	55112108 to 55137322	25214	+	protein coding gene	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
Tssr29148	3	55112354 to 55112376	22	+	TSS region	transcription start site region 29148
Tssr29149	3	55112377 to 55112405	28	+	TSS region	transcription start site region 29149
Tssr29150	3	55116174 to 55116195	21	+	TSS region	transcription start site region 29150
Cpgi13185	3	55117285 to 55117583	298		CpG island	CpG island 13185
Ccdc169	3	55137339 to 55172935	35596	+	protein coding gene	coiled-coil domain containing 169
Tssr29151	3	55140033 to 55140049	16	+	TSS region	transcription start site region 29151
Gm22029	3	55162314 to 55162434	120	-	miRNA gene	predicted gene, 22029
Cpgi13186	3	55181909 to 55182558	649		CpG island	CpG island 13186
Tssr29152	3	55182007 to 55182012	5	+	TSS region	transcription start site region 29152
Tssr29153	3	55182024 to 55182059	35	+	TSS region	transcription start site region 29153
Sohlh2	3	55182044 to 55209957	27913	+	protein coding gene	spermatogenesis and oogenesis specific basic helix-loop-helix 2
Cpgi13187	3	55242337 to 55243006	669		CpG island	CpG island 13187
Dclk1	3	55242369 to 55539068	296699	+	protein coding gene	doublecortin-like kinase 1
Tssr29154	3	55242530 to 55242555	25	+	TSS region	transcription start site region 29154
Tssr29155	3	55242561 to 55242579	18	+	TSS region	transcription start site region 29155
Tssr29156	3	55242586 to 55242645	59	+	TSS region	transcription start site region 29156
Tssr29157	3	55242653 to 55242664	11	+	TSS region	transcription start site region 29157
Tssr29158	3	55247065 to 55247084	19	+	TSS region	transcription start site region 29158
Tssr29159	3	55247103 to 55247150	47	+	TSS region	transcription start site region 29159