Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:54777364-56004068

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smad9 3 54755582 to 54801257 45675 + protein coding gene SMAD family member 9
Cpgi13176 3 54782527 to 54782747 220 CpG island CpG island 13176
Cpgi13177 3 54786017 to 54786403 386 CpG island CpG island 13177
D3Mit135.1 3 54791152 to 54791279 127 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 135.1
D3Mit135 3 54791327 to 54791454 127 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 135
Cpgi13178 3 54797380 to 54797774 394 CpG island CpG island 13178
Rfxap 3 54803115 to 54807791 4676 - protein coding gene regulatory factor X-associated protein
Cpgi13179 3 54807046 to 54808397 1351 CpG island CpG island 13179
Tssr33283 3 54807737 to 54807746 9 - TSS region transcription start site region 33283
Tssr33284 3 54807752 to 54807768 16 - TSS region transcription start site region 33284
Tssr33285 3 54807770 to 54807804 34 - TSS region transcription start site region 33285
Tssr33286 3 54807816 to 54807827 11 - TSS region transcription start site region 33286
Gm10254 3 54810384 to 54811250 866 - pseudogene predicted gene 10254
Cpgi13180 3 54811189 to 54811454 265 CpG island CpG island 13180
Tssr33287 3 54811402 to 54811404 2 - TSS region transcription start site region 33287
Sertm1 3 54897068 to 54915887 18819 - protein coding gene serine rich and transmembrane domain containing 1
Cpgi13181 3 54899375 to 54899791 416 CpG island CpG island 13181
Cpgi13182 3 54915402 to 54916167 765 CpG island CpG island 13182
Tssr33288 3 54915814 to 54915827 13 - TSS region transcription start site region 33288
Tssr33289 3 54915867 to 54915884 17 - TSS region transcription start site region 33289
Tssr33290 3 54915985 to 54916021 36 - TSS region transcription start site region 33290
Gm31358 3 54916019 to 54953257 37238 + lncRNA gene predicted gene, 31358
Ccna1 3 55045469 to 55055330 9861 - protein coding gene cyclin A1
Cpgi13183 3 55054736 to 55055913 1177 CpG island CpG island 13183
Tssr33291 3 55054983 to 55055022 39 - TSS region transcription start site region 33291
Tssr33292 3 55055038 to 55055051 13 - TSS region transcription start site region 33292
Tssr33293 3 55055088 to 55055127 39 - TSS region transcription start site region 33293
Tssr29145 3 55055217 to 55055236 19 + TSS region transcription start site region 29145
Tssr29146 3 55055237 to 55055269 32 + TSS region transcription start site region 29146
4931419H13Rik 3 55055242 to 55084002 28760 + antisense lncRNA gene RIKEN cDNA 4931419H13 gene
Tssr33294 3 55055478 to 55055491 13 - TSS region transcription start site region 33294
Tssr33295 3 55055501 to 55055519 18 - TSS region transcription start site region 33295
Gm43555 3 55057347 to 55057656 309 - pseudogene predicted gene 43555
Cpgi13184 3 55111915 to 55112724 809 CpG island CpG island 13184
Tssr29147 3 55112080 to 55112171 91 + TSS region transcription start site region 29147
Spg20 3 55112108 to 55137322 25214 + protein coding gene spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
Tssr29148 3 55112354 to 55112376 22 + TSS region transcription start site region 29148
Tssr29149 3 55112377 to 55112405 28 + TSS region transcription start site region 29149
Tssr29150 3 55116174 to 55116195 21 + TSS region transcription start site region 29150
Cpgi13185 3 55117285 to 55117583 298 CpG island CpG island 13185
Ccdc169 3 55137339 to 55172935 35596 + protein coding gene coiled-coil domain containing 169
Tssr29151 3 55140033 to 55140049 16 + TSS region transcription start site region 29151
Gm22029 3 55162314 to 55162434 120 - miRNA gene predicted gene, 22029
Cpgi13186 3 55181909 to 55182558 649 CpG island CpG island 13186
Tssr29152 3 55182007 to 55182012 5 + TSS region transcription start site region 29152
Tssr29153 3 55182024 to 55182059 35 + TSS region transcription start site region 29153
Sohlh2 3 55182044 to 55209957 27913 + protein coding gene spermatogenesis and oogenesis specific basic helix-loop-helix 2
Cpgi13187 3 55242337 to 55243006 669 CpG island CpG island 13187
Dclk1 3 55242369 to 55539068 296699 + protein coding gene doublecortin-like kinase 1
Tssr29154 3 55242530 to 55242555 25 + TSS region transcription start site region 29154
Tssr29155 3 55242561 to 55242579 18 + TSS region transcription start site region 29155
Tssr29156 3 55242586 to 55242645 59 + TSS region transcription start site region 29156
Tssr29157 3 55242653 to 55242664 11 + TSS region transcription start site region 29157
Tssr29158 3 55247065 to 55247084 19 + TSS region transcription start site region 29158
Tssr29159 3 55247103 to 55247150 47 + TSS region transcription start site region 29159
Tssr29160 3 55281249 to 55281266 17 + TSS region transcription start site region 29160
9430012M22Rik 3 55290943 to 55291944 1001 unclassified gene RIKEN cDNA 9430012M22 gene
Gm25132 3 55305317 to 55305423 106 + snRNA gene predicted gene, 25132
Tssr29161 3 55324388 to 55324391 3 + TSS region transcription start site region 29161
Gm19817 3 55330841 to 55332972 2131 + unclassified gene predicted gene, 19817
Gm40051 3 55352396 to 55380785 28389 - lncRNA gene predicted gene, 40051
Tssr29162 3 55371985 to 55372009 24 + TSS region transcription start site region 29162
Gm42609 3 55377457 to 55403122 25665 - antisense lncRNA gene predicted gene 42609
Gm9831 3 55391809 to 55404199 12390 - protein coding gene predicted gene 9831
Tssr33296 3 55403191 to 55403210 19 - TSS region transcription start site region 33296
Tssr33297 3 55403211 to 55403225 14 - TSS region transcription start site region 33297
D3Mit208 3 55429825 to 55429970 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 208
Cpgi13188 3 55461724 to 55461947 223 CpG island CpG island 13188
Tssr29163 3 55461858 to 55461863 5 + TSS region transcription start site region 29163
Tssr29164 3 55461867 to 55461961 94 + TSS region transcription start site region 29164
Tssr29165 3 55461963 to 55461977 14 + TSS region transcription start site region 29165
Gm21954 3 55461985 to 55472210 10225 - protein coding gene predicted gene, 21954
Tssr29166 3 55467193 to 55467197 4 + TSS region transcription start site region 29166
Gm31443 3 55476089 to 55481618 5529 - lncRNA gene predicted gene, 31443
Gm42607 3 55483788 to 55487180 3392 + unclassified gene predicted gene 42607
Tssr29167 3 55503152 to 55503153 1 + TSS region transcription start site region 29167
Tssr881 3 55516357 to 55516398 41 + TSS region transcription start site region 881
Gm42608 3 55517569 to 55519586 2017 + unclassified gene predicted gene 42608
Tssr29168 3 55527875 to 55527886 11 + TSS region transcription start site region 29168
Tssr29169 3 55533778 to 55533795 17 + TSS region transcription start site region 29169
Tssr29170 3 55533992 to 55533995 3 + TSS region transcription start site region 29170
Tssr29171 3 55537176 to 55537185 9 + TSS region transcription start site region 29171
Tssr33298 3 55539969 to 55539972 3 - TSS region transcription start site region 33298
Gm31796 3 55540450 to 55543382 2932 - lncRNA gene predicted gene, 31796
Cpgi13189 3 55542760 to 55542976 216 CpG island CpG island 13189
Gm25404 3 55548446 to 55548552 106 + snRNA gene predicted gene, 25404
Gm43548 3 55574921 to 55577273 2352 + unclassified gene predicted gene 43548
Gm43549 3 55580430 to 55581434 1004 - lincRNA gene predicted gene 43549
Nbea 3 55625195 to 56183701 558506 - protein coding gene neurobeachin
Gm46804 3 55705887 to 55715652 9765 + lncRNA gene predicted gene, 46804
Tssr29172 3 55707507 to 55707525 18 + TSS region transcription start site region 29172
Tssr29173 3 55707543 to 55707548 5 + TSS region transcription start site region 29173
D430004P15Rik 3 55725927 to 55728436 2509 unclassified gene Riken cDNA D430004P15 gene
Tssr882 3 55740604 to 55740609 5 + TSS region transcription start site region 882
Cpgi13190 3 55780078 to 55780962 884 CpG island CpG island 13190
Tssr33299 3 55780684 to 55780698 14 - TSS region transcription start site region 33299
Tssr33300 3 55780872 to 55780895 23 - TSS region transcription start site region 33300
Tssr29174 3 55782500 to 55782521 21 + TSS region transcription start site region 29174
Mab21l1 3 55782510 to 55785001 2491 + protein coding gene mab-21-like 1
Tssr29175 3 55782530 to 55782549 19 + TSS region transcription start site region 29175
Cpgi13191 3 55782618 to 55784123 1505 CpG island CpG island 13191
Tssr29176 3 55783382 to 55783404 22 + TSS region transcription start site region 29176
Tssr33301 3 55783470 to 55783492 22 - TSS region transcription start site region 33301
Tssr33302 3 55784340 to 55784352 12 - TSS region transcription start site region 33302
Cpgi13192 3 55787508 to 55788114 606 CpG island CpG island 13192
Tssr33303 3 55788745 to 55788749 4 - TSS region transcription start site region 33303
Tssr33304 3 55792416 to 55792437 21 - TSS region transcription start site region 33304
6720451E02Rik 3 55833671 to 55834459 788 unclassified gene RIKEN cDNA 6720451E02 gene
4933417G07Rik 3 55847105 to 55848065 960 + pseudogene RIKEN cDNA 4933417G07 gene
B230206L23Rik 3 55855247 to 55856151 904 unclassified gene RIKEN cDNA B230206L23 gene
Gm31914 3 55883268 to 56000320 117052 + lncRNA gene predicted gene, 31914
Tssr29177 3 55890302 to 55890313 11 + TSS region transcription start site region 29177
Gm43376 3 55890306 to 55936699 46393 + antisense lncRNA gene predicted gene 43376
D3Dcr4 3 55943611 to 55943719 108 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 4
Gm22784 3 55956782 to 55956913 131 - snoRNA gene predicted gene, 22784
D3Dcr5 3 55986213 to 55986311 98 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 5