Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:54752068-55060887

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13174 3 54754975 to 54756277 1302 CpG island CpG island 13174
Tssr29141 3 54755541 to 54755571 30 + TSS region transcription start site region 29141
Tssr29142 3 54755574 to 54755589 15 + TSS region transcription start site region 29142
Smad9 3 54755582 to 54801257 45675 + protein coding gene SMAD family member 9
Tssr29143 3 54755628 to 54755648 20 + TSS region transcription start site region 29143
Cpgi13175 3 54764483 to 54764740 257 CpG island CpG island 13175
Tssr29144 3 54766483 to 54766486 3 + TSS region transcription start site region 29144
Cpgi13176 3 54782527 to 54782747 220 CpG island CpG island 13176
Cpgi13177 3 54786017 to 54786403 386 CpG island CpG island 13177
D3Mit135.1 3 54791152 to 54791279 127 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 135.1
D3Mit135 3 54791327 to 54791454 127 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 135
Cpgi13178 3 54797380 to 54797774 394 CpG island CpG island 13178
Rfxap 3 54803115 to 54807791 4676 - protein coding gene regulatory factor X-associated protein
Cpgi13179 3 54807046 to 54808397 1351 CpG island CpG island 13179
Tssr33283 3 54807737 to 54807746 9 - TSS region transcription start site region 33283
Tssr33284 3 54807752 to 54807768 16 - TSS region transcription start site region 33284
Tssr33285 3 54807770 to 54807804 34 - TSS region transcription start site region 33285
Tssr33286 3 54807816 to 54807827 11 - TSS region transcription start site region 33286
Gm10254 3 54810384 to 54811250 866 - pseudogene predicted gene 10254
Cpgi13180 3 54811189 to 54811454 265 CpG island CpG island 13180
Tssr33287 3 54811402 to 54811404 2 - TSS region transcription start site region 33287
Sertm1 3 54897068 to 54915887 18819 - protein coding gene serine rich and transmembrane domain containing 1
Cpgi13181 3 54899375 to 54899791 416 CpG island CpG island 13181
Cpgi13182 3 54915402 to 54916167 765 CpG island CpG island 13182
Tssr33288 3 54915814 to 54915827 13 - TSS region transcription start site region 33288
Tssr33289 3 54915867 to 54915884 17 - TSS region transcription start site region 33289
Tssr33290 3 54915985 to 54916021 36 - TSS region transcription start site region 33290
Gm31358 3 54916019 to 54953257 37238 + lncRNA gene predicted gene, 31358
Ccna1 3 55045469 to 55055330 9861 - protein coding gene cyclin A1
Cpgi13183 3 55054736 to 55055913 1177 CpG island CpG island 13183
Tssr33291 3 55054983 to 55055022 39 - TSS region transcription start site region 33291
Tssr33292 3 55055038 to 55055051 13 - TSS region transcription start site region 33292
Tssr33293 3 55055088 to 55055127 39 - TSS region transcription start site region 33293
Tssr29145 3 55055217 to 55055236 19 + TSS region transcription start site region 29145
Tssr29146 3 55055237 to 55055269 32 + TSS region transcription start site region 29146
4931419H13Rik 3 55055242 to 55084002 28760 + antisense lncRNA gene RIKEN cDNA 4931419H13 gene
Tssr33294 3 55055478 to 55055491 13 - TSS region transcription start site region 33294
Tssr33295 3 55055501 to 55055519 18 - TSS region transcription start site region 33295
Gm43555 3 55057347 to 55057656 309 - pseudogene predicted gene 43555