Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:53721039-54591074

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr29122 3 53725450 to 53725461 11 + TSS region transcription start site region 29122
Gm30735 3 53725477 to 53733018 7541 + lincRNA gene predicted gene, 30735
D3Mit136 3 53733933 to 53734067 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 136
Gm10727 3 53736225 to 53737826 1601 + unclassified gene predicted gene 10727
C820005J03Rik 3 53756731 to 53772950 16219 + lincRNA gene RIKEN cDNA C820005J03 gene
Gm24851 3 53843407 to 53843509 102 + snRNA gene predicted gene, 24851
Gm10985 3 53845086 to 53845278 192 + protein coding gene predicted gene 10985
Ufm1 3 53853376 to 53863807 10431 - protein coding gene ubiquitin-fold modifier 1
Cpgi13168 3 53863364 to 53864170 806 CpG island CpG island 13168
Tssr33277 3 53863764 to 53863830 66 - TSS region transcription start site region 33277
Gm31026 3 53924835 to 53943528 18693 + lincRNA gene predicted gene, 31026
Gm8109 3 54021164 to 54021909 745 + pseudogene predicted gene 8109
Gm18018 3 54029992 to 54030399 407 + pseudogene predicted gene, 18018
Cpgi13169 3 54155786 to 54156867 1081 CpG island CpG island 13169
Tssr29123 3 54156039 to 54156074 35 + TSS region transcription start site region 29123
Trpc4 3 54156051 to 54318471 162420 + protein coding gene transient receptor potential cation channel, subfamily C, member 4
Tssr29124 3 54156152 to 54156178 26 + TSS region transcription start site region 29124
D3Mit66 3 54212913 to 54213082 169 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 66
Tssr29125 3 54246133 to 54246144 11 + TSS region transcription start site region 29125
Tssr29126 3 54295306 to 54295317 11 + TSS region transcription start site region 29126
Gm31095 3 54359662 to 54361006 1344 - lncRNA gene predicted gene, 31095
Tssr29127 3 54361103 to 54361116 13 + TSS region transcription start site region 29127
Postn 3 54361109 to 54391037 29928 + protein coding gene periostin, osteoblast specific factor
Tssr29128 3 54367599 to 54367619 20 + TSS region transcription start site region 29128
Tssr29129 3 54383411 to 54383426 15 + TSS region transcription start site region 29129
D3Mit1007 3 54384013 to 54384262 249 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1007
Tssr33278 3 54389366 to 54389384 18 - TSS region transcription start site region 33278
Tssr880 3 54390281 to 54390294 13 + TSS region transcription start site region 880
Gm5641 3 54481438 to 54482925 1487 + pseudogene predicted gene 5641
Gm31154 3 54488563 to 54534891 46328 - lncRNA gene predicted gene, 31154
Tssr29130 3 54569897 to 54569917 20 + TSS region transcription start site region 29130
Gm40050 3 54590551 to 54601388 10837 - lncRNA gene predicted gene, 40050