Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:53506035-54968471

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stoml3 3 53488793 to 53507652 18859 + protein coding gene stomatin (Epb7.2)-like 3
6430500D05Rik 3 53508928 to 53510103 1175 + unclassified gene RIKEN cDNA 6430500D05 gene
Gm23675 3 53512002 to 53512126 124 + snoRNA gene predicted gene, 23675
Frem2 3 53513938 to 53657355 143417 - protein coding gene Fras1 related extracellular matrix protein 2
Cpgi13166 3 53525714 to 53526119 405 CpG island CpG island 13166
Tssr33271 3 53557556 to 53557571 15 - TSS region transcription start site region 33271
Tssr879 3 53614760 to 53614761 1 + TSS region transcription start site region 879
Cpgi13167 3 53656116 to 53657634 1518 CpG island CpG island 13167
Tssr33272 3 53657100 to 53657112 12 - TSS region transcription start site region 33272
Tssr33273 3 53657124 to 53657190 66 - TSS region transcription start site region 33273
Tssr33274 3 53657299 to 53657308 9 - TSS region transcription start site region 33274
Tssr33275 3 53657339 to 53657391 52 - TSS region transcription start site region 33275
Gm6073 3 53666863 to 53667328 465 - pseudogene predicted gene 6073
Gm6204 3 53692422 to 53692878 456 - pseudogene predicted gene 6204
Tssr33276 3 53692908 to 53692916 8 - TSS region transcription start site region 33276
Tssr29121 3 53703406 to 53703461 55 + TSS region transcription start site region 29121
Tssr29122 3 53725450 to 53725461 11 + TSS region transcription start site region 29122
Gm30735 3 53725477 to 53733018 7541 + lincRNA gene predicted gene, 30735
D3Mit136 3 53733933 to 53734067 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 136
Gm10727 3 53736225 to 53737826 1601 + unclassified gene predicted gene 10727
C820005J03Rik 3 53756731 to 53772950 16219 + lincRNA gene RIKEN cDNA C820005J03 gene
Gm24851 3 53843407 to 53843509 102 + snRNA gene predicted gene, 24851
Gm10985 3 53845086 to 53845278 192 + protein coding gene predicted gene 10985
Ufm1 3 53853376 to 53863807 10431 - protein coding gene ubiquitin-fold modifier 1
Cpgi13168 3 53863364 to 53864170 806 CpG island CpG island 13168
Tssr33277 3 53863764 to 53863830 66 - TSS region transcription start site region 33277
Gm31026 3 53924835 to 53943528 18693 + lincRNA gene predicted gene, 31026
Gm8109 3 54021164 to 54021909 745 + pseudogene predicted gene 8109
Gm18018 3 54029992 to 54030399 407 + pseudogene predicted gene, 18018
Cpgi13169 3 54155786 to 54156867 1081 CpG island CpG island 13169
Tssr29123 3 54156039 to 54156074 35 + TSS region transcription start site region 29123
Trpc4 3 54156051 to 54318471 162420 + protein coding gene transient receptor potential cation channel, subfamily C, member 4
Tssr29124 3 54156152 to 54156178 26 + TSS region transcription start site region 29124
D3Mit66 3 54212913 to 54213082 169 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 66
Tssr29125 3 54246133 to 54246144 11 + TSS region transcription start site region 29125
Tssr29126 3 54295306 to 54295317 11 + TSS region transcription start site region 29126
Gm31095 3 54359662 to 54361006 1344 - lncRNA gene predicted gene, 31095
Tssr29127 3 54361103 to 54361116 13 + TSS region transcription start site region 29127
Postn 3 54361109 to 54391037 29928 + protein coding gene periostin, osteoblast specific factor
Tssr29128 3 54367599 to 54367619 20 + TSS region transcription start site region 29128
Tssr29129 3 54383411 to 54383426 15 + TSS region transcription start site region 29129
D3Mit1007 3 54384013 to 54384262 249 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1007
Tssr33278 3 54389366 to 54389384 18 - TSS region transcription start site region 33278
Tssr880 3 54390281 to 54390294 13 + TSS region transcription start site region 880
Gm5641 3 54481438 to 54482925 1487 + pseudogene predicted gene 5641
Gm31154 3 54488563 to 54534891 46328 - lncRNA gene predicted gene, 31154
Tssr29130 3 54569897 to 54569917 20 + TSS region transcription start site region 29130
Gm40050 3 54590551 to 54601388 10837 - lncRNA gene predicted gene, 40050
Gm26678 3 54631439 to 54634627 3188 + lincRNA gene predicted gene, 26678
B020017C02Rik 3 54632881 to 54633963 1082 - pseudogene RIKEN cDNA B020017C02 gene
Cpgi13170 3 54633128 to 54633759 631 CpG island CpG island 13170
Cpgi13171 3 54634272 to 54634440 168 CpG island CpG island 13171
Tssr33279 3 54634626 to 54634629 3 - TSS region transcription start site region 33279
Tssr33280 3 54686753 to 54686780 27 - TSS region transcription start site region 33280
Tssr33281 3 54686808 to 54686821 13 - TSS region transcription start site region 33281
Cpgi13172 3 54692349 to 54693187 838 CpG island CpG island 13172
Tssr29131 3 54692775 to 54692800 25 + TSS region transcription start site region 29131
Tssr29132 3 54692805 to 54692836 31 + TSS region transcription start site region 29132
Supt20 3 54692807 to 54728766 35959 + protein coding gene suppressor of Ty 20
Tssr29133 3 54692849 to 54692868 19 + TSS region transcription start site region 29133
Tssr29134 3 54692883 to 54692892 9 + TSS region transcription start site region 29134
Tssr29135 3 54693034 to 54693055 21 + TSS region transcription start site region 29135
Tssr29136 3 54693059 to 54693079 20 + TSS region transcription start site region 29136
Tssr29137 3 54693088 to 54693101 13 + TSS region transcription start site region 29137
Gm21958 3 54713176 to 54714353 1177 - protein coding gene predicted gene, 21958
Tssr29138 3 54717564 to 54717596 32 + TSS region transcription start site region 29138
Exosc8 3 54728679 to 54735364 6685 - protein coding gene exosome component 8
Cpgi13173 3 54734367 to 54735954 1587 CpG island CpG island 13173
Tssr33282 3 54735001 to 54735078 77 - TSS region transcription start site region 33282
Tssr29139 3 54735536 to 54735586 50 + TSS region transcription start site region 29139
Alg5 3 54735539 to 54749795 14256 + protein coding gene asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)
D3Mit275 3 54743396 to 54743520 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 275
Tssr29140 3 54744495 to 54744511 16 + TSS region transcription start site region 29140
Cpgi13174 3 54754975 to 54756277 1302 CpG island CpG island 13174
Tssr29141 3 54755541 to 54755571 30 + TSS region transcription start site region 29141
Tssr29142 3 54755574 to 54755589 15 + TSS region transcription start site region 29142
Smad9 3 54755582 to 54801257 45675 + protein coding gene SMAD family member 9
Tssr29143 3 54755628 to 54755648 20 + TSS region transcription start site region 29143
Cpgi13175 3 54764483 to 54764740 257 CpG island CpG island 13175
Tssr29144 3 54766483 to 54766486 3 + TSS region transcription start site region 29144
Cpgi13176 3 54782527 to 54782747 220 CpG island CpG island 13176
Cpgi13177 3 54786017 to 54786403 386 CpG island CpG island 13177
D3Mit135.1 3 54791152 to 54791279 127 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 135.1
D3Mit135 3 54791327 to 54791454 127 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 135
Cpgi13178 3 54797380 to 54797774 394 CpG island CpG island 13178
Rfxap 3 54803115 to 54807791 4676 - protein coding gene regulatory factor X-associated protein
Cpgi13179 3 54807046 to 54808397 1351 CpG island CpG island 13179
Tssr33283 3 54807737 to 54807746 9 - TSS region transcription start site region 33283
Tssr33284 3 54807752 to 54807768 16 - TSS region transcription start site region 33284
Tssr33285 3 54807770 to 54807804 34 - TSS region transcription start site region 33285
Tssr33286 3 54807816 to 54807827 11 - TSS region transcription start site region 33286
Gm10254 3 54810384 to 54811250 866 - pseudogene predicted gene 10254
Cpgi13180 3 54811189 to 54811454 265 CpG island CpG island 13180
Tssr33287 3 54811402 to 54811404 2 - TSS region transcription start site region 33287
Sertm1 3 54897068 to 54915887 18819 - protein coding gene serine rich and transmembrane domain containing 1
Cpgi13181 3 54899375 to 54899791 416 CpG island CpG island 13181
Cpgi13182 3 54915402 to 54916167 765 CpG island CpG island 13182
Tssr33288 3 54915814 to 54915827 13 - TSS region transcription start site region 33288
Tssr33289 3 54915867 to 54915884 17 - TSS region transcription start site region 33289
Tssr33290 3 54915985 to 54916021 36 - TSS region transcription start site region 33290
Gm31358 3 54916019 to 54953257 37238 + lncRNA gene predicted gene, 31358