Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:53100678-53801032

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lhfp 3 53041547 to 53261679 220132 + protein coding gene lipoma HMGIC fusion partner
C130075A20Rik 3 53099000 to 53103175 4175 + unclassified gene RIKEN cDNA C130075A20 gene
Gm43804 3 53109668 to 53110123 455 + unclassified gene predicted gene 43804
Gm43803 3 53110396 to 53113411 3015 - antisense lncRNA gene predicted gene 43803
Gm43805 3 53112166 to 53112989 823 + unclassified gene predicted gene 43805
D3Mit67 3 53152562 to 53152704 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 67
Tssr29107 3 53175474 to 53175477 3 + TSS region transcription start site region 29107
D3Mit184 3 53207002 to 53207136 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 184
Tssr29108 3 53231726 to 53231736 10 + TSS region transcription start site region 29108
Tssr29109 3 53235207 to 53235210 3 + TSS region transcription start site region 29109
Tssr29110 3 53260511 to 53260536 25 + TSS region transcription start site region 29110
Tssr29111 3 53260818 to 53260854 36 + TSS region transcription start site region 29111
Tssr29112 3 53261199 to 53261205 6 + TSS region transcription start site region 29112
Cpgi13161 3 53334117 to 53334287 170 CpG island CpG island 13161
Gm43472 3 53346492 to 53347229 737 - pseudogene predicted gene 43472
Gm40048 3 53395750 to 53398501 2751 + lncRNA gene predicted gene, 40048
Gm43471 3 53401731 to 53402197 466 - pseudogene predicted gene 43471
Cpgi13162 3 53450678 to 53451032 354 CpG island CpG island 13162
Nhlrc3 3 53451996 to 53463258 11262 - protein coding gene NHL repeat containing 3
Tssr33268 3 53452179 to 53452191 12 - TSS region transcription start site region 33268
Gm16206 3 53452619 to 53457797 5178 + antisense lncRNA gene predicted gene 16206
Cpgi13163 3 53462965 to 53464047 1082 CpG island CpG island 13163
Tssr33269 3 53463200 to 53463232 32 - TSS region transcription start site region 33269
Tssr33270 3 53463234 to 53463306 72 - TSS region transcription start site region 33270
Tssr29113 3 53463574 to 53463590 16 + TSS region transcription start site region 29113
Tssr29114 3 53463666 to 53463681 15 + TSS region transcription start site region 29114
Tssr29115 3 53463694 to 53463709 15 + TSS region transcription start site region 29115
Tssr29116 3 53463779 to 53463822 43 + TSS region transcription start site region 29116
Proser1 3 53463817 to 53481755 17938 + protein coding gene proline and serine rich 1
Tssr29117 3 53463895 to 53463906 11 + TSS region transcription start site region 29117
Tssr29118 3 53475330 to 53475380 50 + TSS region transcription start site region 29118
Cpgi13164 3 53477468 to 53477943 475 CpG island CpG island 13164
Cpgi13165 3 53478550 to 53479109 559 CpG island CpG island 13165
Tssr29119 3 53488642 to 53488661 19 + TSS region transcription start site region 29119
Tssr29120 3 53488677 to 53488714 37 + TSS region transcription start site region 29120
Stoml3 3 53488793 to 53507652 18859 + protein coding gene stomatin (Epb7.2)-like 3
6430500D05Rik 3 53508928 to 53510103 1175 + unclassified gene RIKEN cDNA 6430500D05 gene
Gm23675 3 53512002 to 53512126 124 + snoRNA gene predicted gene, 23675
Frem2 3 53513938 to 53657355 143417 - protein coding gene Fras1 related extracellular matrix protein 2
Cpgi13166 3 53525714 to 53526119 405 CpG island CpG island 13166
Tssr33271 3 53557556 to 53557571 15 - TSS region transcription start site region 33271
Tssr879 3 53614760 to 53614761 1 + TSS region transcription start site region 879
Cpgi13167 3 53656116 to 53657634 1518 CpG island CpG island 13167
Tssr33272 3 53657100 to 53657112 12 - TSS region transcription start site region 33272
Tssr33273 3 53657124 to 53657190 66 - TSS region transcription start site region 33273
Tssr33274 3 53657299 to 53657308 9 - TSS region transcription start site region 33274
Tssr33275 3 53657339 to 53657391 52 - TSS region transcription start site region 33275
Gm6073 3 53666863 to 53667328 465 - pseudogene predicted gene 6073
Gm6204 3 53692422 to 53692878 456 - pseudogene predicted gene 6204
Tssr33276 3 53692908 to 53692916 8 - TSS region transcription start site region 33276
Tssr29121 3 53703406 to 53703461 55 + TSS region transcription start site region 29121
Tssr29122 3 53725450 to 53725461 11 + TSS region transcription start site region 29122
Gm30735 3 53725477 to 53733018 7541 + lincRNA gene predicted gene, 30735
D3Mit136 3 53733933 to 53734067 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 136
Gm10727 3 53736225 to 53737826 1601 + unclassified gene predicted gene 10727
C820005J03Rik 3 53756731 to 53772950 16219 + lincRNA gene RIKEN cDNA C820005J03 gene