MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 3:52307170-52653269

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19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Foxo1	3	52268337 to 52350109	81772	+	protein coding gene	forkhead box O1
Tssr33259	3	52390871 to 52390921	50	-	TSS region	transcription start site region 33259
Tssr29094	3	52396543 to 52396552	9	+	TSS region	transcription start site region 29094
Cpgi13157	3	52401271 to 52401486	215		CpG island	CpG island 13157
Gm34303	3	52425346 to 52425728	382	+	pseudogene	predicted gene, 34303
Gm38098	3	52425408 to 52425648	240	+	pseudogene	predicted gene, 38098
Gm38537	3	52467170 to 52493269	26099	+	lncRNA gene	predicted gene, 38537
Tssr29095	3	52468555 to 52468568	13	+	TSS region	transcription start site region 29095
Tssr29096	3	52516951 to 52516997	46	+	TSS region	transcription start site region 29096
Gm30173	3	52516964 to 52550219	33255	+	lincRNA gene	predicted gene, 30173
D3Mit364	3	52566211 to 52566359	148		DNA segment	DNA Segment, Chr 3, Massachusetts Institute of Technology-364
Gm40047	3	52580135 to 52589071	8936	+	lncRNA gene	predicted gene, 40047
Cpgi13158	3	52600929 to 52601427	498		CpG island	CpG island 13158
Gm10293	3	52612835 to 52613836	1001	+	pseudogene	predicted pseudogene 10293
Tssr33260	3	52634446 to 52634455	9	-	TSS region	transcription start site region 33260
Tssr33261	3	52634484 to 52634491	7	-	TSS region	transcription start site region 33261
Tssr29097	3	52648148 to 52648151	3	+	TSS region	transcription start site region 29097
Gm30235	3	52649889 to 52709714	59825	+	lncRNA gene	predicted gene, 30235
Tssr29098	3	52649966 to 52649973	7	+	TSS region	transcription start site region 29098