Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:52223817-54721755

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tpcq1 3 50300000 to 52300000 2000000 QTL total plasma cholesterol QTL 1
Olfr1398-ps1 3 52236838 to 52237749 911 - pseudogene olfactory receptor 1398, pseudogene 1
Gm30125 3 52237447 to 52256496 19049 + lncRNA gene predicted gene, 30125
Cpgi13156 3 52267553 to 52270149 2596 CpG island CpG island 13156
Foxo1 3 52268337 to 52350109 81772 + protein coding gene forkhead box O1
Tssr29089 3 52268374 to 52268388 14 + TSS region transcription start site region 29089
Tssr29090 3 52268393 to 52268405 12 + TSS region transcription start site region 29090
Tssr29091 3 52268407 to 52268424 17 + TSS region transcription start site region 29091
Gm20402 3 52268435 to 52269435 1000 - antisense lncRNA gene predicted gene 20402
Tssr29092 3 52270198 to 52270208 10 + TSS region transcription start site region 29092
Tssr29093 3 52276153 to 52276159 6 + TSS region transcription start site region 29093
Gm38034 3 52282241 to 52284309 2068 + unclassified gene predicted gene, 38034
D3Mit207 3 52284478 to 52284566 88 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 207
Tssr33259 3 52390871 to 52390921 50 - TSS region transcription start site region 33259
Tssr29094 3 52396543 to 52396552 9 + TSS region transcription start site region 29094
Cpgi13157 3 52401271 to 52401486 215 CpG island CpG island 13157
Gm34303 3 52425346 to 52425728 382 + pseudogene predicted gene, 34303
Gm38098 3 52425408 to 52425648 240 + pseudogene predicted gene, 38098
Gm38537 3 52467170 to 52493269 26099 + lncRNA gene predicted gene, 38537
Tssr29095 3 52468555 to 52468568 13 + TSS region transcription start site region 29095
Tssr29096 3 52516951 to 52516997 46 + TSS region transcription start site region 29096
Gm30173 3 52516964 to 52550219 33255 + lincRNA gene predicted gene, 30173
D3Mit364 3 52566211 to 52566359 148 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-364
Gm40047 3 52580135 to 52589071 8936 + lncRNA gene predicted gene, 40047
Cpgi13158 3 52600929 to 52601427 498 CpG island CpG island 13158
Gm10293 3 52612835 to 52613836 1001 + pseudogene predicted pseudogene 10293
Tssr33260 3 52634446 to 52634455 9 - TSS region transcription start site region 33260
Tssr33261 3 52634484 to 52634491 7 - TSS region transcription start site region 33261
Tssr29097 3 52648148 to 52648151 3 + TSS region transcription start site region 29097
Gm30235 3 52649889 to 52709714 59825 + lncRNA gene predicted gene, 30235
Tssr29098 3 52649966 to 52649973 7 + TSS region transcription start site region 29098
D3Mit276 3 52668614 to 52668730 116 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 276
D3Ertd270e 3 52678760 to 52678965 205 DNA segment DNA segment, Chr 3, ERATO Doi 270, expressed
Tssr29099 3 52709191 to 52709193 2 + TSS region transcription start site region 29099
Gm22798 3 52722649 to 52722755 106 - snRNA gene predicted gene, 22798
Tssr29100 3 52736458 to 52736462 4 + TSS region transcription start site region 29100
Gm2447 3 52739724 to 52776654 36930 + lincRNA gene predicted gene 2447
Tssr29101 3 52739726 to 52739736 10 + TSS region transcription start site region 29101
Tssr33262 3 52755045 to 52755056 11 - TSS region transcription start site region 33262
Gm30292 3 52789004 to 52797785 8781 - lincRNA gene predicted gene, 30292
Tssr33263 3 52856354 to 52856365 11 - TSS region transcription start site region 33263
Tssr33264 3 52856373 to 52856385 12 - TSS region transcription start site region 33264
Tssr33265 3 52856397 to 52856422 25 - TSS region transcription start site region 33265
Tssr33266 3 52856455 to 52856463 8 - TSS region transcription start site region 33266
Gm20750 3 52906756 to 52927666 20910 - lincRNA gene predicted gene, 20750
Gm30351 3 52933249 to 52956278 23029 + lncRNA gene predicted gene, 30351
Gm30402 3 52956176 to 52957892 1716 - lncRNA gene predicted gene, 30402
Gm37007 3 52960048 to 52960366 318 - pseudogene predicted gene, 37007
Tssr878 3 52972738 to 52972743 5 + TSS region transcription start site region 878
Cog6 3 52982123 to 53017223 35100 - protein coding gene component of oligomeric golgi complex 6
Cpgi13159 3 53016829 to 53017360 531 CpG island CpG island 13159
Tssr33267 3 53017195 to 53017247 52 - TSS region transcription start site region 33267
Gm42901 3 53038585 to 53041755 3170 - antisense lncRNA gene predicted gene 42901
Cpgi13160 3 53041088 to 53042095 1007 CpG island CpG island 13160
Tssr29102 3 53041517 to 53041579 62 + TSS region transcription start site region 29102
Lhfp 3 53041547 to 53261679 220132 + protein coding gene lipoma HMGIC fusion partner
Tssr29103 3 53041630 to 53041635 5 + TSS region transcription start site region 29103
Tssr29104 3 53054013 to 53054018 5 + TSS region transcription start site region 29104
Tssr29105 3 53054677 to 53054681 4 + TSS region transcription start site region 29105
Gm42898 3 53072165 to 53075237 3072 - unclassified gene predicted gene 42898
Gm42899 3 53083219 to 53085885 2666 + unclassified gene predicted gene 42899
Tssr29106 3 53083611 to 53083615 4 + TSS region transcription start site region 29106
C130075A20Rik 3 53099000 to 53103175 4175 + unclassified gene RIKEN cDNA C130075A20 gene
Gm43804 3 53109668 to 53110123 455 + unclassified gene predicted gene 43804
Gm43803 3 53110396 to 53113411 3015 - antisense lncRNA gene predicted gene 43803
Gm43805 3 53112166 to 53112989 823 + unclassified gene predicted gene 43805
D3Mit67 3 53152562 to 53152704 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 67
Tssr29107 3 53175474 to 53175477 3 + TSS region transcription start site region 29107
D3Mit184 3 53207002 to 53207136 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 184
Tssr29108 3 53231726 to 53231736 10 + TSS region transcription start site region 29108
Tssr29109 3 53235207 to 53235210 3 + TSS region transcription start site region 29109
Tssr29110 3 53260511 to 53260536 25 + TSS region transcription start site region 29110
Tssr29111 3 53260818 to 53260854 36 + TSS region transcription start site region 29111
Tssr29112 3 53261199 to 53261205 6 + TSS region transcription start site region 29112
Cpgi13161 3 53334117 to 53334287 170 CpG island CpG island 13161
Gm43472 3 53346492 to 53347229 737 - pseudogene predicted gene 43472
Gm40048 3 53395750 to 53398501 2751 + lncRNA gene predicted gene, 40048
Gm43471 3 53401731 to 53402197 466 - pseudogene predicted gene 43471
Cpgi13162 3 53450678 to 53451032 354 CpG island CpG island 13162
Nhlrc3 3 53451996 to 53463258 11262 - protein coding gene NHL repeat containing 3
Tssr33268 3 53452179 to 53452191 12 - TSS region transcription start site region 33268
Gm16206 3 53452619 to 53457797 5178 + antisense lncRNA gene predicted gene 16206
Cpgi13163 3 53462965 to 53464047 1082 CpG island CpG island 13163
Tssr33269 3 53463200 to 53463232 32 - TSS region transcription start site region 33269
Tssr33270 3 53463234 to 53463306 72 - TSS region transcription start site region 33270
Tssr29113 3 53463574 to 53463590 16 + TSS region transcription start site region 29113
Tssr29114 3 53463666 to 53463681 15 + TSS region transcription start site region 29114
Tssr29115 3 53463694 to 53463709 15 + TSS region transcription start site region 29115
Tssr29116 3 53463779 to 53463822 43 + TSS region transcription start site region 29116
Proser1 3 53463817 to 53481755 17938 + protein coding gene proline and serine rich 1
Tssr29117 3 53463895 to 53463906 11 + TSS region transcription start site region 29117
Tssr29118 3 53475330 to 53475380 50 + TSS region transcription start site region 29118
Cpgi13164 3 53477468 to 53477943 475 CpG island CpG island 13164
Cpgi13165 3 53478550 to 53479109 559 CpG island CpG island 13165
Tssr29119 3 53488642 to 53488661 19 + TSS region transcription start site region 29119
Tssr29120 3 53488677 to 53488714 37 + TSS region transcription start site region 29120
Stoml3 3 53488793 to 53507652 18859 + protein coding gene stomatin (Epb7.2)-like 3
6430500D05Rik 3 53508928 to 53510103 1175 + unclassified gene RIKEN cDNA 6430500D05 gene
Gm23675 3 53512002 to 53512126 124 + snoRNA gene predicted gene, 23675
Frem2 3 53513938 to 53657355 143417 - protein coding gene Fras1 related extracellular matrix protein 2
Cpgi13166 3 53525714 to 53526119 405 CpG island CpG island 13166
Tssr33271 3 53557556 to 53557571 15 - TSS region transcription start site region 33271
Tssr879 3 53614760 to 53614761 1 + TSS region transcription start site region 879
Cpgi13167 3 53656116 to 53657634 1518 CpG island CpG island 13167
Tssr33272 3 53657100 to 53657112 12 - TSS region transcription start site region 33272
Tssr33273 3 53657124 to 53657190 66 - TSS region transcription start site region 33273
Tssr33274 3 53657299 to 53657308 9 - TSS region transcription start site region 33274
Tssr33275 3 53657339 to 53657391 52 - TSS region transcription start site region 33275
Gm6073 3 53666863 to 53667328 465 - pseudogene predicted gene 6073
Gm6204 3 53692422 to 53692878 456 - pseudogene predicted gene 6204
Tssr33276 3 53692908 to 53692916 8 - TSS region transcription start site region 33276
Tssr29121 3 53703406 to 53703461 55 + TSS region transcription start site region 29121
Tssr29122 3 53725450 to 53725461 11 + TSS region transcription start site region 29122
Gm30735 3 53725477 to 53733018 7541 + lincRNA gene predicted gene, 30735
D3Mit136 3 53733933 to 53734067 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 136
Gm10727 3 53736225 to 53737826 1601 + unclassified gene predicted gene 10727
C820005J03Rik 3 53756731 to 53772950 16219 + lincRNA gene RIKEN cDNA C820005J03 gene
Gm24851 3 53843407 to 53843509 102 + snRNA gene predicted gene, 24851
Gm10985 3 53845086 to 53845278 192 + protein coding gene predicted gene 10985
Ufm1 3 53853376 to 53863807 10431 - protein coding gene ubiquitin-fold modifier 1
Cpgi13168 3 53863364 to 53864170 806 CpG island CpG island 13168
Tssr33277 3 53863764 to 53863830 66 - TSS region transcription start site region 33277
Gm31026 3 53924835 to 53943528 18693 + lincRNA gene predicted gene, 31026
Gm8109 3 54021164 to 54021909 745 + pseudogene predicted gene 8109
Gm18018 3 54029992 to 54030399 407 + pseudogene predicted gene, 18018
Cpgi13169 3 54155786 to 54156867 1081 CpG island CpG island 13169
Tssr29123 3 54156039 to 54156074 35 + TSS region transcription start site region 29123
Trpc4 3 54156051 to 54318471 162420 + protein coding gene transient receptor potential cation channel, subfamily C, member 4
Tssr29124 3 54156152 to 54156178 26 + TSS region transcription start site region 29124
D3Mit66 3 54212913 to 54213082 169 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 66
Tssr29125 3 54246133 to 54246144 11 + TSS region transcription start site region 29125
Tssr29126 3 54295306 to 54295317 11 + TSS region transcription start site region 29126
Gm31095 3 54359662 to 54361006 1344 - lncRNA gene predicted gene, 31095
Tssr29127 3 54361103 to 54361116 13 + TSS region transcription start site region 29127
Postn 3 54361109 to 54391037 29928 + protein coding gene periostin, osteoblast specific factor
Tssr29128 3 54367599 to 54367619 20 + TSS region transcription start site region 29128
Tssr29129 3 54383411 to 54383426 15 + TSS region transcription start site region 29129
D3Mit1007 3 54384013 to 54384262 249 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 1007
Tssr33278 3 54389366 to 54389384 18 - TSS region transcription start site region 33278
Tssr880 3 54390281 to 54390294 13 + TSS region transcription start site region 880
Gm5641 3 54481438 to 54482925 1487 + pseudogene predicted gene 5641
Gm31154 3 54488563 to 54534891 46328 - lncRNA gene predicted gene, 31154
Tssr29130 3 54569897 to 54569917 20 + TSS region transcription start site region 29130
Gm40050 3 54590551 to 54601388 10837 - lncRNA gene predicted gene, 40050
Gm26678 3 54631439 to 54634627 3188 + lincRNA gene predicted gene, 26678
B020017C02Rik 3 54632881 to 54633963 1082 - pseudogene RIKEN cDNA B020017C02 gene
Cpgi13170 3 54633128 to 54633759 631 CpG island CpG island 13170
Cpgi13171 3 54634272 to 54634440 168 CpG island CpG island 13171
Tssr33279 3 54634626 to 54634629 3 - TSS region transcription start site region 33279
Tssr33280 3 54686753 to 54686780 27 - TSS region transcription start site region 33280
Tssr33281 3 54686808 to 54686821 13 - TSS region transcription start site region 33281
Cpgi13172 3 54692349 to 54693187 838 CpG island CpG island 13172
Tssr29131 3 54692775 to 54692800 25 + TSS region transcription start site region 29131
Tssr29132 3 54692805 to 54692836 31 + TSS region transcription start site region 29132
Supt20 3 54692807 to 54728766 35959 + protein coding gene suppressor of Ty 20
Tssr29133 3 54692849 to 54692868 19 + TSS region transcription start site region 29133
Tssr29134 3 54692883 to 54692892 9 + TSS region transcription start site region 29134
Tssr29135 3 54693034 to 54693055 21 + TSS region transcription start site region 29135
Tssr29136 3 54693059 to 54693079 20 + TSS region transcription start site region 29136
Tssr29137 3 54693088 to 54693101 13 + TSS region transcription start site region 29137
Gm21958 3 54713176 to 54714353 1177 - protein coding gene predicted gene, 21958
Tssr29138 3 54717564 to 54717596 32 + TSS region transcription start site region 29138