Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:52168337-52450109

31 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tpcq1	3	50300000 to 52300000	2000000		QTL	total plasma cholesterol QTL 1
Gm37202	3	52134047 to 52221997	87950	-	lincRNA gene	predicted gene, 37202
Gm30074	3	52172162 to 52179972	7810	-	lincRNA gene	predicted gene, 30074
D3Mit183	3	52176672 to 52176810	138		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 183
Tssr33254	3	52179952 to 52179955	3	-	TSS region	transcription start site region 33254
Tssr33255	3	52179965 to 52179976	11	-	TSS region	transcription start site region 33255
Tssr33256	3	52179986 to 52179997	11	-	TSS region	transcription start site region 33256
Tssr33257	3	52180003 to 52180014	11	-	TSS region	transcription start site region 33257
Gm38132	3	52186573 to 52187957	1384	+	unclassified non-coding RNA gene	predicted gene, 38132
Tssr29088	3	52186583 to 52186602	19	+	TSS region	transcription start site region 29088
Cpgi13154	3	52196044 to 52196516	472		CpG island	CpG island 13154
Tssr33258	3	52198060 to 52198073	13	-	TSS region	transcription start site region 33258
Gm37170	3	52198248 to 52200489	2241	+	lincRNA gene	predicted gene, 37170
Cpgi13155	3	52210427 to 52210664	237		CpG island	CpG island 13155
Olfr1398-ps1	3	52236838 to 52237749	911	-	pseudogene	olfactory receptor 1398, pseudogene 1
Gm30125	3	52237447 to 52256496	19049	+	lncRNA gene	predicted gene, 30125
Cpgi13156	3	52267553 to 52270149	2596		CpG island	CpG island 13156
Foxo1	3	52268337 to 52350109	81772	+	protein coding gene	forkhead box O1
Tssr29089	3	52268374 to 52268388	14	+	TSS region	transcription start site region 29089
Tssr29090	3	52268393 to 52268405	12	+	TSS region	transcription start site region 29090
Tssr29091	3	52268407 to 52268424	17	+	TSS region	transcription start site region 29091
Gm20402	3	52268435 to 52269435	1000	-	antisense lncRNA gene	predicted gene 20402
Tssr29092	3	52270198 to 52270208	10	+	TSS region	transcription start site region 29092
Tssr29093	3	52276153 to 52276159	6	+	TSS region	transcription start site region 29093
Gm38034	3	52282241 to 52284309	2068	+	unclassified gene	predicted gene, 38034
D3Mit207	3	52284478 to 52284566	88		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 207
Tssr33259	3	52390871 to 52390921	50	-	TSS region	transcription start site region 33259
Tssr29094	3	52396543 to 52396552	9	+	TSS region	transcription start site region 29094
Cpgi13157	3	52401271 to 52401486	215		CpG island	CpG island 13157
Gm34303	3	52425346 to 52425728	382	+	pseudogene	predicted gene, 34303
Gm38098	3	52425408 to 52425648	240	+	pseudogene	predicted gene, 38098