Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:52131543-52661552

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tpcq1 3 50300000 to 52300000 2000000 QTL total plasma cholesterol QTL 1
Gm37202 3 52134047 to 52221997 87950 - lincRNA gene predicted gene, 37202
Gm30074 3 52172162 to 52179972 7810 - lincRNA gene predicted gene, 30074
D3Mit183 3 52176672 to 52176810 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 183
Tssr33254 3 52179952 to 52179955 3 - TSS region transcription start site region 33254
Tssr33255 3 52179965 to 52179976 11 - TSS region transcription start site region 33255
Tssr33256 3 52179986 to 52179997 11 - TSS region transcription start site region 33256
Tssr33257 3 52180003 to 52180014 11 - TSS region transcription start site region 33257
Gm38132 3 52186573 to 52187957 1384 + unclassified non-coding RNA gene predicted gene, 38132
Tssr29088 3 52186583 to 52186602 19 + TSS region transcription start site region 29088
Cpgi13154 3 52196044 to 52196516 472 CpG island CpG island 13154
Tssr33258 3 52198060 to 52198073 13 - TSS region transcription start site region 33258
Gm37170 3 52198248 to 52200489 2241 + lincRNA gene predicted gene, 37170
Cpgi13155 3 52210427 to 52210664 237 CpG island CpG island 13155
Olfr1398-ps1 3 52236838 to 52237749 911 - pseudogene olfactory receptor 1398, pseudogene 1
Gm30125 3 52237447 to 52256496 19049 + lncRNA gene predicted gene, 30125
Cpgi13156 3 52267553 to 52270149 2596 CpG island CpG island 13156
Foxo1 3 52268337 to 52350109 81772 + protein coding gene forkhead box O1
Tssr29089 3 52268374 to 52268388 14 + TSS region transcription start site region 29089
Tssr29090 3 52268393 to 52268405 12 + TSS region transcription start site region 29090
Tssr29091 3 52268407 to 52268424 17 + TSS region transcription start site region 29091
Gm20402 3 52268435 to 52269435 1000 - antisense lncRNA gene predicted gene 20402
Tssr29092 3 52270198 to 52270208 10 + TSS region transcription start site region 29092
Tssr29093 3 52276153 to 52276159 6 + TSS region transcription start site region 29093
Gm38034 3 52282241 to 52284309 2068 + unclassified gene predicted gene, 38034
D3Mit207 3 52284478 to 52284566 88 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 207
Tssr33259 3 52390871 to 52390921 50 - TSS region transcription start site region 33259
Tssr29094 3 52396543 to 52396552 9 + TSS region transcription start site region 29094
Cpgi13157 3 52401271 to 52401486 215 CpG island CpG island 13157
Gm34303 3 52425346 to 52425728 382 + pseudogene predicted gene, 34303
Gm38098 3 52425408 to 52425648 240 + pseudogene predicted gene, 38098
Gm38537 3 52467170 to 52493269 26099 + lncRNA gene predicted gene, 38537
Tssr29095 3 52468555 to 52468568 13 + TSS region transcription start site region 29095
Tssr29096 3 52516951 to 52516997 46 + TSS region transcription start site region 29096
Gm30173 3 52516964 to 52550219 33255 + lincRNA gene predicted gene, 30173
D3Mit364 3 52566211 to 52566359 148 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-364
Gm40047 3 52580135 to 52589071 8936 + lncRNA gene predicted gene, 40047
Cpgi13158 3 52600929 to 52601427 498 CpG island CpG island 13158
Gm10293 3 52612835 to 52613836 1001 + pseudogene predicted pseudogene 10293
Tssr33260 3 52634446 to 52634455 9 - TSS region transcription start site region 33260
Tssr33261 3 52634484 to 52634491 7 - TSS region transcription start site region 33261
Tssr29097 3 52648148 to 52648151 3 + TSS region transcription start site region 29097
Gm30235 3 52649889 to 52709714 59825 + lncRNA gene predicted gene, 30235
Tssr29098 3 52649966 to 52649973 7 + TSS region transcription start site region 29098