Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:51529066-52489095

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tpcq1 3 50300000 to 52300000 2000000 QTL total plasma cholesterol QTL 1
Setd7 3 51515318 to 51560823 45505 - protein coding gene SET domain containing (lysine methyltransferase) 7
D3Ertd491e 3 51538164 to 51538369 205 DNA segment DNA segment, Chr 3, ERATO Doi 491, expressed
Tssr33221 3 51554051 to 51554060 9 - TSS region transcription start site region 33221
Tssr33222 3 51554072 to 51554083 11 - TSS region transcription start site region 33222
Tssr33223 3 51554093 to 51554102 9 - TSS region transcription start site region 33223
Gm38200 3 51557542 to 51559652 2110 - unclassified gene predicted gene, 38200
Tssr33224 3 51559581 to 51559597 16 - TSS region transcription start site region 33224
Tssr33225 3 51559620 to 51559633 13 - TSS region transcription start site region 33225
Cpgi13142 3 51559665 to 51561565 1900 CpG island CpG island 13142
Tssr29063 3 51559769 to 51559781 12 + TSS region transcription start site region 29063
Tssr29064 3 51559973 to 51559976 3 + TSS region transcription start site region 29064
5031434O11Rik 3 51560035 to 51567117 7082 + lncRNA gene RIKEN cDNA 5031434O11 gene
Tssr33226 3 51560595 to 51560686 91 - TSS region transcription start site region 33226
Tssr33227 3 51560801 to 51560809 8 - TSS region transcription start site region 33227
Tssr33228 3 51560816 to 51560875 59 - TSS region transcription start site region 33228
Tssr33229 3 51561782 to 51561818 36 - TSS region transcription start site region 33229
Tssr33230 3 51566300 to 51566303 3 - TSS region transcription start site region 33230
Gm38334 3 51571111 to 51571423 312 - pseudogene predicted gene, 38334
Cpgi13143 3 51572652 to 51573150 498 CpG island CpG island 13143
5430433H01Rik 3 51582306 to 51582847 541 + unclassified gene RIKEN cDNA 5430433H01 gene
Tssr29065 3 51590707 to 51590714 7 + TSS region transcription start site region 29065
Cpgi13144 3 51603973 to 51604187 214 CpG island CpG island 13144
Gm38247 3 51636496 to 51636928 432 - pseudogene predicted gene, 38247
Tssr875 3 51636731 to 51636752 21 + TSS region transcription start site region 875
Cpgi13145 3 51636773 to 51636964 191 CpG island CpG island 13145
D3Mit153 3 51647204 to 51647353 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 153
Tssr29066 3 51652910 to 51652931 21 + TSS region transcription start site region 29066
Tssr29067 3 51660353 to 51660364 11 + TSS region transcription start site region 29067
Mgst2 3 51660360 to 51682675 22315 + protein coding gene microsomal glutathione S-transferase 2
Tssr29068 3 51660372 to 51660375 3 + TSS region transcription start site region 29068
Tssr29069 3 51660378 to 51660395 17 + TSS region transcription start site region 29069
Tssr29070 3 51660396 to 51660406 10 + TSS region transcription start site region 29070
Tssr29071 3 51661001 to 51661005 4 + TSS region transcription start site region 29071
Tssr29072 3 51661067 to 51661070 3 + TSS region transcription start site region 29072
Tssr29073 3 51661167 to 51661189 22 + TSS region transcription start site region 29073
Tssr29074 3 51661209 to 51661250 41 + TSS region transcription start site region 29074
Tssr33231 3 51662778 to 51662798 20 - TSS region transcription start site region 33231
Tssr29075 3 51666114 to 51666130 16 + TSS region transcription start site region 29075
Gm37261 3 51672801 to 51673901 1100 + unclassified gene predicted gene, 37261
Tssr29076 3 51675150 to 51675153 3 + TSS region transcription start site region 29076
Tssr29077 3 51682613 to 51682625 12 + TSS region transcription start site region 29077
Maml3 3 51687320 to 52105086 417766 - protein coding gene mastermind like transcriptional coactivator 3
Gm10729 3 51693716 to 51695090 1374 + protein coding gene predicted gene 10729
Cpgi13146 3 51694230 to 51694737 507 CpG island CpG island 13146
Cpgi13147 3 51701436 to 51701839 403 CpG island CpG island 13147
Gm46803 3 51707717 to 51712255 4538 + lncRNA gene predicted gene, 46803
Tssr33232 3 51750859 to 51750868 9 - TSS region transcription start site region 33232
Gm37342 3 51757124 to 51762088 4964 - unclassified gene predicted gene, 37342
D3Mit119 3 51759815 to 51759955 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 119
Tssr29078 3 51765549 to 51765560 11 + TSS region transcription start site region 29078
Tssr29079 3 51765661 to 51765695 34 + TSS region transcription start site region 29079
Tssr33233 3 51788647 to 51788654 7 - TSS region transcription start site region 33233
Tssr33234 3 51788703 to 51788714 11 - TSS region transcription start site region 33234
Tssr29080 3 51788975 to 51788991 16 + TSS region transcription start site region 29080
Tssr33235 3 51789125 to 51789129 4 - TSS region transcription start site region 33235
Tssr33236 3 51796516 to 51796538 22 - TSS region transcription start site region 33236
Gm37229 3 51812951 to 51819309 6358 + antisense lncRNA gene predicted gene, 37229
Tssr33237 3 51814015 to 51814023 8 - TSS region transcription start site region 33237
n-R5s196 3 51828912 to 51829028 116 + rRNA gene nuclear encoded rRNA 5S 196
3110080O07Rik 3 51829385 to 51830405 1020 - unclassified gene RIKEN cDNA 3110080O07 gene
Gm38000 3 51867345 to 51868559 1214 - unclassified gene predicted gene, 38000
D3Mit354 3 51868220 to 51868563 343 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 354
Gm37675 3 51872990 to 51875836 2846 - unclassified gene predicted gene, 37675
Tssr33238 3 51875808 to 51875809 1 - TSS region transcription start site region 33238
Tssr29081 3 51879369 to 51879370 1 + TSS region transcription start site region 29081
Gm38252 3 51884276 to 51886891 2615 - unclassified gene predicted gene, 38252
Tssr33239 3 51903356 to 51903369 13 - TSS region transcription start site region 33239
Gm10728 3 51906986 to 51908816 1830 - pseudogene predicted gene 10728
Tssr33240 3 51930029 to 51930032 3 - TSS region transcription start site region 33240
Cpgi13148 3 51953298 to 51953472 174 CpG island CpG island 13148
Tssr33241 3 51964966 to 51964982 16 - TSS region transcription start site region 33241
Gm20089 3 51980941 to 51990075 9134 + antisense lncRNA gene predicted gene, 20089
Gm38055 3 51987631 to 51989847 2216 - unclassified gene predicted gene, 38055
Gm37526 3 51991341 to 51991959 618 - unclassified gene predicted gene, 37526
Gm37465 3 52000736 to 52004025 3289 - unclassified gene predicted gene, 37465
D3Wsu174e 3 52000865 to 52001090 225 DNA segment DNA segment, Chr 3, Wayne State University 174, expressed
Cpgi13149 3 52007472 to 52007978 506 CpG island CpG island 13149
Tssr33242 3 52009066 to 52009095 29 - TSS region transcription start site region 33242
Tssr33243 3 52009133 to 52009157 24 - TSS region transcription start site region 33243
Tssr33244 3 52009169 to 52009181 12 - TSS region transcription start site region 33244
Tssr876 3 52009206 to 52009221 15 - TSS region transcription start site region 876
Tssr33245 3 52009227 to 52009240 13 - TSS region transcription start site region 33245
Tssr33246 3 52041318 to 52041323 5 - TSS region transcription start site region 33246
Tssr29082 3 52047356 to 52047378 22 + TSS region transcription start site region 29082
Tssr33247 3 52056345 to 52056367 22 - TSS region transcription start site region 33247
Tssr33248 3 52056405 to 52056428 23 - TSS region transcription start site region 33248
C130089K02Rik 3 52057285 to 52064244 6959 - unclassified gene RIKEN cDNA C130089K02 gene
Tssr33249 3 52064227 to 52064232 5 - TSS region transcription start site region 33249
Cpgi13150 3 52069766 to 52069988 222 CpG island CpG island 13150
Tssr29083 3 52069969 to 52069970 1 + TSS region transcription start site region 29083
Tssr877 3 52070000 to 52070022 22 - TSS region transcription start site region 877
Tssr29084 3 52070109 to 52070159 50 + TSS region transcription start site region 29084
5430420F09Rik 3 52071589 to 52073387 1798 - unclassified gene RIKEN cDNA 5430420F09 gene
Tssr33250 3 52092732 to 52092736 4 - TSS region transcription start site region 33250
Cpgi13151 3 52101805 to 52104185 2380 CpG island CpG island 13151
Tssr29085 3 52102823 to 52102837 14 + TSS region transcription start site region 29085
Tssr29086 3 52103346 to 52103373 27 + TSS region transcription start site region 29086
Cpgi13152 3 52104419 to 52105741 1322 CpG island CpG island 13152
Tssr33251 3 52104903 to 52104922 19 - TSS region transcription start site region 33251
Tssr33252 3 52104984 to 52105032 48 - TSS region transcription start site region 33252
Tssr33253 3 52105045 to 52105056 11 - TSS region transcription start site region 33253
Cpgi13153 3 52128802 to 52129001 199 CpG island CpG island 13153
Tssr29087 3 52129464 to 52129470 6 + TSS region transcription start site region 29087
Gm37202 3 52134047 to 52221997 87950 - lincRNA gene predicted gene, 37202
Gm30074 3 52172162 to 52179972 7810 - lincRNA gene predicted gene, 30074
D3Mit183 3 52176672 to 52176810 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 183
Tssr33254 3 52179952 to 52179955 3 - TSS region transcription start site region 33254
Tssr33255 3 52179965 to 52179976 11 - TSS region transcription start site region 33255
Tssr33256 3 52179986 to 52179997 11 - TSS region transcription start site region 33256
Tssr33257 3 52180003 to 52180014 11 - TSS region transcription start site region 33257
Gm38132 3 52186573 to 52187957 1384 + unclassified non-coding RNA gene predicted gene, 38132
Tssr29088 3 52186583 to 52186602 19 + TSS region transcription start site region 29088
Cpgi13154 3 52196044 to 52196516 472 CpG island CpG island 13154
Tssr33258 3 52198060 to 52198073 13 - TSS region transcription start site region 33258
Gm37170 3 52198248 to 52200489 2241 + lincRNA gene predicted gene, 37170
Cpgi13155 3 52210427 to 52210664 237 CpG island CpG island 13155
Olfr1398-ps1 3 52236838 to 52237749 911 - pseudogene olfactory receptor 1398, pseudogene 1
Gm30125 3 52237447 to 52256496 19049 + lncRNA gene predicted gene, 30125
Cpgi13156 3 52267553 to 52270149 2596 CpG island CpG island 13156
Foxo1 3 52268337 to 52350109 81772 + protein coding gene forkhead box O1
Tssr29089 3 52268374 to 52268388 14 + TSS region transcription start site region 29089
Tssr29090 3 52268393 to 52268405 12 + TSS region transcription start site region 29090
Tssr29091 3 52268407 to 52268424 17 + TSS region transcription start site region 29091
Gm20402 3 52268435 to 52269435 1000 - antisense lncRNA gene predicted gene 20402
Tssr29092 3 52270198 to 52270208 10 + TSS region transcription start site region 29092
Tssr29093 3 52276153 to 52276159 6 + TSS region transcription start site region 29093
Gm38034 3 52282241 to 52284309 2068 + unclassified gene predicted gene, 38034
D3Mit207 3 52284478 to 52284566 88 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 207
Tssr33259 3 52390871 to 52390921 50 - TSS region transcription start site region 33259
Tssr29094 3 52396543 to 52396552 9 + TSS region transcription start site region 29094
Cpgi13157 3 52401271 to 52401486 215 CpG island CpG island 13157
Gm34303 3 52425346 to 52425728 382 + pseudogene predicted gene, 34303
Gm38098 3 52425408 to 52425648 240 + pseudogene predicted gene, 38098
Gm38537 3 52467170 to 52493269 26099 + lncRNA gene predicted gene, 38537
Tssr29095 3 52468555 to 52468568 13 + TSS region transcription start site region 29095