Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:5139048-9719062

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267 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2700069I18Rik 3 5177824 to 5220823 42999 - antisense lncRNA gene RIKEN cDNA 2700069I18 gene
Cpgi12947 3 5210235 to 5210508 273 CpG island CpG island 12947
Gm10748 3 5212838 to 5215216 2378 + unclassified gene predicted gene 10748
Cpgi12948 3 5218267 to 5218543 276 CpG island CpG island 12948
Tssr28265 3 5218516 to 5218544 28 + TSS region transcription start site region 28265
Zfhx4 3 5218526 to 5415857 197331 + protein coding gene zinc finger homeodomain 4
Tssr28266 3 5218546 to 5218561 15 + TSS region transcription start site region 28266
Tssr28267 3 5218563 to 5218587 24 + TSS region transcription start site region 28267
Tssr28268 3 5218590 to 5218614 24 + TSS region transcription start site region 28268
Tssr28269 3 5218629 to 5218684 55 + TSS region transcription start site region 28269
Cpgi12949 3 5218752 to 5219897 1145 CpG island CpG island 12949
Tssr28270 3 5218819 to 5218830 11 + TSS region transcription start site region 28270
Tssr28271 3 5219025 to 5219036 11 + TSS region transcription start site region 28271
Tssr28272 3 5219039 to 5219053 14 + TSS region transcription start site region 28272
Tssr28273 3 5219060 to 5219074 14 + TSS region transcription start site region 28273
Tssr32523 3 5220771 to 5220795 24 - TSS region transcription start site region 32523
Tssr28274 3 5221048 to 5221069 21 + TSS region transcription start site region 28274
Tssr28275 3 5221189 to 5221203 14 + TSS region transcription start site region 28275
Tssr28276 3 5221225 to 5221245 20 + TSS region transcription start site region 28276
D3Mit150 3 5347040 to 5347155 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 150
Tssr32524 3 5357884 to 5357928 44 - TSS region transcription start site region 32524
Tssr28277 3 5400597 to 5400624 27 + TSS region transcription start site region 28277
Tssr28278 3 5400650 to 5400662 12 + TSS region transcription start site region 28278
Tssr28279 3 5401047 to 5401051 4 + TSS region transcription start site region 28279
4930555M17Rik 3 5512995 to 5515333 2338 - lincRNA gene RIKEN cDNA 4930555M17 gene
Tssr32525 3 5515330 to 5515338 8 - TSS region transcription start site region 32525
Tssr28280 3 5515451 to 5515473 22 + TSS region transcription start site region 28280
Pex2 3 5560188 to 5576239 16051 - protein coding gene peroxisomal biogenesis factor 2
Gm6146 3 5573092 to 5577652 4560 unclassified gene predicted gene 6146
Cpgi12950 3 5575745 to 5576764 1019 CpG island CpG island 12950
Tssr28281 3 5575879 to 5575913 34 + TSS region transcription start site region 28281
Tssr32526 3 5576094 to 5576110 16 - TSS region transcription start site region 32526
Tssr32527 3 5576111 to 5576162 51 - TSS region transcription start site region 32527
Tssr32528 3 5576172 to 5576183 11 - TSS region transcription start site region 32528
Tssr32529 3 5576219 to 5576231 12 - TSS region transcription start site region 32529
Tssr32530 3 5576233 to 5576244 11 - TSS region transcription start site region 32530
Tssr28282 3 5750803 to 5750804 1 + TSS region transcription start site region 28282
Gm8797 3 5750893 to 5751295 402 + protein coding gene predicted pseudogene 8797
D3Mit117 3 5806440 to 5806615 175 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 117
Tssr28283 3 5860331 to 5860367 36 + TSS region transcription start site region 28283
Cpgi12951 3 5860625 to 5860830 205 CpG island CpG island 12951
Tssr28284 3 5860628 to 5860652 24 + TSS region transcription start site region 28284
Tssr28285 3 5860668 to 5860718 50 + TSS region transcription start site region 28285
Tssr813 3 5860696 to 5860726 30 - TSS region transcription start site region 813
Gm37350 3 5880832 to 5885503 4671 - lincRNA gene predicted gene, 37350
Gm25352 3 5881041 to 5881150 109 + miRNA gene predicted gene, 25352
Gm25144 3 5885595 to 5885704 109 + miRNA gene predicted gene, 25144
Tssr32531 3 5950466 to 5950480 14 - TSS region transcription start site region 32531
Gm46796 3 6107017 to 6115376 8359 + lncRNA gene predicted gene, 46796
Tssr28286 3 6107491 to 6107503 12 + TSS region transcription start site region 28286
Tssr28287 3 6107519 to 6107531 12 + TSS region transcription start site region 28287
Tssr28288 3 6107532 to 6107554 22 + TSS region transcription start site region 28288
C130051G18Rik 3 6111379 to 6112306 927 unclassified gene RIKEN cDNA C130051G18 gene
Cpgi12952 3 6136991 to 6137635 644 CpG island CpG island 12952
Gm17934 3 6137823 to 6138244 421 - pseudogene predicted gene, 17934
Gm6162 3 6164895 to 6167824 2929 - pseudogene predicted gene 6162
Tssr32532 3 6169801 to 6169806 5 - TSS region transcription start site region 32532
Gm38298 3 6267783 to 6267900 117 - pseudogene predicted gene, 38298
Gm41989 3 6284283 to 6287079 2796 + lncRNA gene predicted gene, 41989
Gm23147 3 6338882 to 6338991 109 - miRNA gene predicted gene, 23147
Gm18658 3 6378332 to 6378601 269 - pseudogene predicted gene, 18658
Gm5272 3 6450607 to 6451588 981 - pseudogene predicted gene 5272
Tssr32533 3 6451664 to 6451675 11 - TSS region transcription start site region 32533
Gm38291 3 6611205 to 6611463 258 - pseudogene predicted gene, 38291
1700008P02Rik 3 6615418 to 6620443 5025 - protein coding gene RIKEN cDNA 1700008P02 gene
Tssr32534 3 6620441 to 6620444 3 - TSS region transcription start site region 32534
Tssr28289 3 6620568 to 6620575 7 + TSS region transcription start site region 28289
Olfr289-ps1 3 6751704 to 6752072 368 - pseudogene olfactory receptor 289, pseudogene 1
Tssr32535 3 6785485 to 6785487 2 - TSS region transcription start site region 32535
Tssr32536 3 6800306 to 6800313 7 - TSS region transcription start site region 32536
Tssr32537 3 6802683 to 6802687 4 - TSS region transcription start site region 32537
D3Mit60 3 6808535 to 6808704 169 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 60
Tssr32538 3 6922585 to 6922589 4 - TSS region transcription start site region 32538
D3Mit269 3 6956392 to 6956516 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 269
D3Mit149 3 6960488 to 6960612 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 149
Gm22074 3 6977268 to 6977380 112 + snoRNA gene predicted gene, 22074
Gm41991 3 7042800 to 7048943 6143 + lncRNA gene predicted gene, 41991
Tssr28290 3 7133293 to 7133296 3 + TSS region transcription start site region 28290
Gm8823 3 7192778 to 7193210 432 - pseudogene predicted gene 8823
Tssr28291 3 7289504 to 7289507 3 + TSS region transcription start site region 28291
Cpgi12953 3 7366282 to 7366948 666 CpG island CpG island 12953
Tssr28292 3 7366589 to 7366594 5 + TSS region transcription start site region 28292
Tssr28293 3 7366598 to 7366641 43 + TSS region transcription start site region 28293
Tssr814 3 7366657 to 7366666 9 + TSS region transcription start site region 814
Pkia 3 7366669 to 7445366 78697 + protein coding gene protein kinase inhibitor, alpha
Tssr28294 3 7366673 to 7366694 21 + TSS region transcription start site region 28294
Tssr28295 3 7366702 to 7366713 11 + TSS region transcription start site region 28295
Tssr28296 3 7390092 to 7390096 4 + TSS region transcription start site region 28296
Tssr28297 3 7407355 to 7407369 14 + TSS region transcription start site region 28297
Gm37918 3 7418340 to 7418459 119 - pseudogene predicted gene, 37918
D3Mit327 3 7422168 to 7422315 147 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 327
Tssr28298 3 7429048 to 7429062 14 + TSS region transcription start site region 28298
Tssr28299 3 7442762 to 7442776 14 + TSS region transcription start site region 28299
Gm8826 3 7454521 to 7455521 1000 + pseudogene predicted gene 8826
Tssr28300 3 7501522 to 7501535 13 + TSS region transcription start site region 28300
Gm23592 3 7501904 to 7502020 116 - snoRNA gene predicted gene, 23592
Cpgi12954 3 7503035 to 7504159 1124 CpG island CpG island 12954
Tssr28301 3 7503423 to 7503503 80 + TSS region transcription start site region 28301
Zc2hc1a 3 7503483 to 7553836 50353 + protein coding gene zinc finger, C2HC-type containing 1A
Cplaq8 3 7521114 to 7891638 370524 QTL circadian period of locomotor activity 8
D3Mit164 3 7521114 to 7521248 134 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 164
Il7 3 7572028 to 7613760 41732 - protein coding gene interleukin 7
Tssr28302 3 7576346 to 7576362 16 + TSS region transcription start site region 28302
Tssr32539 3 7606505 to 7606519 14 - TSS region transcription start site region 32539
Tssr32540 3 7606533 to 7606550 17 - TSS region transcription start site region 32540
Cpgi12955 3 7612701 to 7613442 741 CpG island CpG island 12955
Tssr28303 3 7612702 to 7612705 3 + TSS region transcription start site region 28303
Gm16685 3 7612705 to 7690001 77296 + antisense lncRNA gene predicted gene, 16685
Tssr32541 3 7613577 to 7613592 15 - TSS region transcription start site region 32541
Tssr32542 3 7613642 to 7613656 14 - TSS region transcription start site region 32542
Tssr32543 3 7613694 to 7613704 10 - TSS region transcription start site region 32543
Tssr32544 3 7613725 to 7613732 7 - TSS region transcription start site region 32544
Tssr32545 3 7613738 to 7613765 27 - TSS region transcription start site region 32545
Tssr32546 3 7613771 to 7613785 14 - TSS region transcription start site region 32546
Tssr28304 3 7613871 to 7613889 18 + TSS region transcription start site region 28304
Tssr28305 3 7615993 to 7616003 10 + TSS region transcription start site region 28305
Tssr28306 3 7617343 to 7617375 32 + TSS region transcription start site region 28306
Tssr28307 3 7618731 to 7618744 13 + TSS region transcription start site region 28307
Tssr28308 3 7618767 to 7618782 15 + TSS region transcription start site region 28308
Tssr28309 3 7618879 to 7618892 13 + TSS region transcription start site region 28309
Tssr28310 3 7620143 to 7620146 3 + TSS region transcription start site region 28310
Tssr28311 3 7624621 to 7624642 21 + TSS region transcription start site region 28311
Tssr28312 3 7626904 to 7626942 38 + TSS region transcription start site region 28312
Tssr28313 3 7629203 to 7629241 38 + TSS region transcription start site region 28313
Tssr28314 3 7635800 to 7635804 4 + TSS region transcription start site region 28314
Tssr28315 3 7644568 to 7644607 39 + TSS region transcription start site region 28315
Tssr28316 3 7646796 to 7646815 19 + TSS region transcription start site region 28316
Tssr28317 3 7646911 to 7646921 10 + TSS region transcription start site region 28317
Tssr28318 3 7646941 to 7646953 12 + TSS region transcription start site region 28318
Tssr28319 3 7647073 to 7647091 18 + TSS region transcription start site region 28319
Tssr28320 3 7647101 to 7647111 10 + TSS region transcription start site region 28320
Tssr28321 3 7647155 to 7647170 15 + TSS region transcription start site region 28321
Tssr28322 3 7660277 to 7660306 29 + TSS region transcription start site region 28322
Tssr28323 3 7686916 to 7686951 35 + TSS region transcription start site region 28323
D3Mit221 3 7891493 to 7891638 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 221
Gm29747 3 7893335 to 7893919 584 + pseudogene predicted gene, 29747
1700010I02Rik 3 7925303 to 7954887 29584 - lincRNA gene RIKEN cDNA 1700010I02 gene
D3Mit235 3 7951701 to 7951838 137 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 235
Tssr32547 3 7954859 to 7954874 15 - TSS region transcription start site region 32547
Tssr32548 3 7954894 to 7954910 16 - TSS region transcription start site region 32548
5330432E05Rik 3 8019669 to 8022831 3162 - unclassified gene RIKEN cDNA 5330432E05 gene
Tssr32549 3 8022828 to 8022857 29 - TSS region transcription start site region 32549
Gm7103 3 8214332 to 8216183 1851 + pseudogene predicted gene 7103
Gm5841 3 8327531 to 8329707 2176 + pseudogene predicted gene 5841
Gm24614 3 8429158 to 8429264 106 + snRNA gene predicted gene, 24614
Gm6194 3 8461387 to 8463098 1711 - pseudogene predicted gene 6194
Cpgi12957 3 8462207 to 8462409 202 CpG island CpG island 12957
1700003N22Rik 3 8462228 to 8463035 807 - pseudogene RIKEN cDNA 1700003N22 gene
Tssr28324 3 8462419 to 8462438 19 + TSS region transcription start site region 28324
Cpgi12958 3 8462705 to 8463080 375 CpG island CpG island 12958
Gm41993 3 8494369 to 8499902 5533 - lncRNA gene predicted gene, 41993
Tssr28325 3 8509477 to 8509550 73 + TSS region transcription start site region 28325
Stmn2 3 8509527 to 8561604 52077 + protein coding gene stathmin-like 2
Tssr28326 3 8509552 to 8509557 5 + TSS region transcription start site region 28326
Cpgi12959 3 8510246 to 8510654 408 CpG island CpG island 12959
Cpgi12960 3 8511305 to 8511746 441 CpG island CpG island 12960
Tssr28327 3 8541852 to 8541875 23 + TSS region transcription start site region 28327
Tssr28328 3 8545615 to 8545628 13 + TSS region transcription start site region 28328
Tssr28329 3 8554894 to 8554906 12 + TSS region transcription start site region 28329
Tssr28330 3 8560326 to 8560357 31 + TSS region transcription start site region 28330
Tssr28331 3 8561096 to 8561110 14 + TSS region transcription start site region 28331
Gm18822 3 8615275 to 8616504 1229 - pseudogene predicted gene, 18822
Gm32496 3 8628051 to 8632454 4403 + lincRNA gene predicted gene, 32496
Hey1 3 8663359 to 8667038 3679 - protein coding gene hairy/enhancer-of-split related with YRPW motif 1
Cpgi12961 3 8664522 to 8665121 599 CpG island CpG island 12961
Tssr32550 3 8665782 to 8665799 17 - TSS region transcription start site region 32550
Cpgi12962 3 8666515 to 8668238 1723 CpG island CpG island 12962
Tssr32551 3 8666833 to 8666843 10 - TSS region transcription start site region 32551
Tssr32552 3 8666963 to 8666978 15 - TSS region transcription start site region 32552
Tssr32553 3 8666997 to 8667012 15 - TSS region transcription start site region 32553
Tssr32554 3 8667033 to 8667046 13 - TSS region transcription start site region 32554
Tssr32555 3 8667049 to 8667056 7 - TSS region transcription start site region 32555
Tssr32556 3 8667277 to 8667296 19 - TSS region transcription start site region 32556
Tssr28332 3 8671343 to 8671345 2 + TSS region transcription start site region 28332
Gm38007 3 8673410 to 8673722 312 + pseudogene predicted gene, 38007
Gm23670 3 8679359 to 8679477 118 - snoRNA gene predicted gene, 23670
Gm32561 3 8679438 to 8693098 13660 - lncRNA gene predicted gene, 32561
Tssr32557 3 8692879 to 8692909 30 - TSS region transcription start site region 32557
Cpgi12963 3 8717532 to 8717724 192 CpG island CpG island 12963
D3Mit264 3 8721265 to 8721372 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 264
Skmw1 3 8721265 to 8721372 107 QTL skeletal muscle weight 1
C230057A21Rik 3 8732870 to 8736360 3490 - lincRNA gene RIKEN cDNA C230057A21 gene
Tssr28333 3 8743642 to 8743692 50 + TSS region transcription start site region 28333
1700042O13Rik 3 8743676 to 8746823 3147 lncRNA gene RIKEN cDNA 1700042O13 gene
Gm37647 3 8743682 to 8746824 3142 - unclassified gene predicted gene, 37647
Tssr28334 3 8746960 to 8746989 29 + TSS region transcription start site region 28334
Cpgi12964 3 8766717 to 8767846 1129 CpG island CpG island 12964
Tssr28335 3 8767140 to 8767152 12 + TSS region transcription start site region 28335
Cpgi12965 3 8785773 to 8786060 287 CpG island CpG island 12965
Mrps28 3 8802146 to 8923857 121711 - protein coding gene mitochondrial ribosomal protein S28
Cpgi12966 3 8805741 to 8806051 310 CpG island CpG island 12966
Tssr32558 3 8829696 to 8829707 11 - TSS region transcription start site region 32558
Tssr32559 3 8829714 to 8829731 17 - TSS region transcription start site region 32559
Tssr32560 3 8863270 to 8863302 32 - TSS region transcription start site region 32560
Gm41995 3 8866119 to 8881665 15546 + lncRNA gene predicted gene, 41995
Tssr28336 3 8881143 to 8881152 9 + TSS region transcription start site region 28336
Gm15467 3 8881199 to 8881643 444 + pseudogene predicted gene 15467
Gm15466 3 8882238 to 8882570 332 - pseudogene predicted gene 15466
Tssr32561 3 8882741 to 8882744 3 - TSS region transcription start site region 32561
Tssr32562 3 8913985 to 8913990 5 - TSS region transcription start site region 32562