Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:51338614-51578630

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Elf2 3 51252720 to 51340663 87943 - protein coding gene E74-like factor 2
Cpgi13133 3 51339650 to 51342165 2515 CpG island CpG island 13133
Tssr29050 3 51340165 to 51340192 27 + TSS region transcription start site region 29050
Tssr29051 3 51340203 to 51340213 10 + TSS region transcription start site region 29051
Tssr33199 3 51340514 to 51340521 7 - TSS region transcription start site region 33199
Tssr33200 3 51340524 to 51340534 10 - TSS region transcription start site region 33200
Tssr33201 3 51340543 to 51340554 11 - TSS region transcription start site region 33201
Tssr33202 3 51340555 to 51340584 29 - TSS region transcription start site region 33202
Tssr33203 3 51340628 to 51340681 53 - TSS region transcription start site region 33203
Tssr33204 3 51340818 to 51340821 3 - TSS region transcription start site region 33204
Tssr29052 3 51340842 to 51340884 42 + TSS region transcription start site region 29052
n-TPtgg7 3 51358354 to 51358425 71 + tRNA gene nuclear encoded tRNA proline 7 (anticodon TGG)
Cpgi13134 3 51358632 to 51359218 586 CpG island CpG island 13134
n-TPagg5 3 51359407 to 51359478 71 + tRNA gene nuclear encoded tRNA proline 5 (anticodon AGG)
Cpgi13135 3 51365151 to 51365512 361 CpG island CpG island 13135
Gm37203 3 51370222 to 51370606 384 + pseudogene predicted gene, 37203
Gm5103 3 51378046 to 51386324 8278 + lincRNA gene predicted gene 5103
Cpgi13136 3 51378434 to 51378701 267 CpG island CpG island 13136
Mgarp 3 51388412 to 51396547 8135 - protein coding gene mitochondria localized glutamic acid rich protein
Tssr33205 3 51394897 to 51394901 4 - TSS region transcription start site region 33205
Cpgi13137 3 51396337 to 51396928 591 CpG island CpG island 13137
Tssr33206 3 51396503 to 51396526 23 - TSS region transcription start site region 33206
Tssr33207 3 51396528 to 51396551 23 - TSS region transcription start site region 33207
Tssr33208 3 51396716 to 51396757 41 - TSS region transcription start site region 33208
Tssr33209 3 51400692 to 51400720 28 - TSS region transcription start site region 33209
Tssr33210 3 51400755 to 51400757 2 - TSS region transcription start site region 33210
Gm9442 3 51402844 to 51403162 318 - pseudogene predicted gene 9442
Ndufc1 3 51405479 to 51408955 3476 - protein coding gene NADH:ubiquinone oxidoreductase subunit C1
Cpgi13138 3 51408544 to 51409090 546 CpG island CpG island 13138
Tssr33211 3 51408925 to 51408984 59 - TSS region transcription start site region 33211
Cpgi13139 3 51415654 to 51416963 1309 CpG island CpG island 13139
Tssr29053 3 51415962 to 51415973 11 + TSS region transcription start site region 29053
Tssr29054 3 51415986 to 51416044 58 + TSS region transcription start site region 29054
Naa15 3 51416016 to 51475985 59969 + protein coding gene N(alpha)-acetyltransferase 15, NatA auxiliary subunit
Tssr29055 3 51416601 to 51416613 12 + TSS region transcription start site region 29055
Tssr29056 3 51418391 to 51418394 3 + TSS region transcription start site region 29056
Gm37646 3 51423613 to 51423723 110 + unclassified gene predicted gene, 37646
Tssr29057 3 51458614 to 51458630 16 + TSS region transcription start site region 29057
Gm38160 3 51482331 to 51484829 2498 - unclassified gene predicted gene, 38160
Cpgi13140 3 51483625 to 51484884 1259 CpG island CpG island 13140
Tssr29058 3 51483945 to 51483961 16 + TSS region transcription start site region 29058
Rab33b 3 51483966 to 51496228 12262 + protein coding gene RAB33B, member RAS oncogene family
Tssr29059 3 51483969 to 51483999 30 + TSS region transcription start site region 29059
Tssr29060 3 51484184 to 51484260 76 + TSS region transcription start site region 29060
Tssr29061 3 51484275 to 51484304 29 + TSS region transcription start site region 29061
Tssr29062 3 51484319 to 51484346 27 + TSS region transcription start site region 29062
Gm37968 3 51489620 to 51492820 3200 + unclassified gene predicted gene, 37968
D3Mit134 3 51497045 to 51497145 100 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 134
D3Mit134.2 3 51497112 to 51497291 179 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 134.2
Cpgi13141 3 51505488 to 51505724 236 CpG island CpG island 13141
Gm36008 3 51510988 to 51514303 3315 + lncRNA gene predicted gene, 36008
Setd7 3 51515318 to 51560823 45505 - protein coding gene SET domain containing (lysine methyltransferase) 7
Tssr33212 3 51516254 to 51516258 4 - TSS region transcription start site region 33212
Tssr33213 3 51517757 to 51517770 13 - TSS region transcription start site region 33213
Tssr33214 3 51517853 to 51517864 11 - TSS region transcription start site region 33214
Tssr33215 3 51517933 to 51517945 12 - TSS region transcription start site region 33215
Tssr33216 3 51517952 to 51517963 11 - TSS region transcription start site region 33216
Tssr33217 3 51518353 to 51518369 16 - TSS region transcription start site region 33217
Tssr33218 3 51518627 to 51518730 103 - TSS region transcription start site region 33218
Tssr33219 3 51518794 to 51518810 16 - TSS region transcription start site region 33219
Tssr33220 3 51521335 to 51521342 7 - TSS region transcription start site region 33220
D3Ertd491e 3 51538164 to 51538369 205 DNA segment DNA segment, Chr 3, ERATO Doi 491, expressed
Tssr33221 3 51554051 to 51554060 9 - TSS region transcription start site region 33221
Tssr33222 3 51554072 to 51554083 11 - TSS region transcription start site region 33222
Tssr33223 3 51554093 to 51554102 9 - TSS region transcription start site region 33223
Gm38200 3 51557542 to 51559652 2110 - unclassified gene predicted gene, 38200
Tssr33224 3 51559581 to 51559597 16 - TSS region transcription start site region 33224
Tssr33225 3 51559620 to 51559633 13 - TSS region transcription start site region 33225
Cpgi13142 3 51559665 to 51561565 1900 CpG island CpG island 13142
Tssr29063 3 51559769 to 51559781 12 + TSS region transcription start site region 29063
Tssr29064 3 51559973 to 51559976 3 + TSS region transcription start site region 29064
5031434O11Rik 3 51560035 to 51567117 7082 + lncRNA gene RIKEN cDNA 5031434O11 gene
Tssr33226 3 51560595 to 51560686 91 - TSS region transcription start site region 33226
Tssr33227 3 51560801 to 51560809 8 - TSS region transcription start site region 33227
Tssr33228 3 51560816 to 51560875 59 - TSS region transcription start site region 33228
Tssr33229 3 51561782 to 51561818 36 - TSS region transcription start site region 33229
Tssr33230 3 51566300 to 51566303 3 - TSS region transcription start site region 33230
Gm38334 3 51571111 to 51571423 312 - pseudogene predicted gene, 38334
Cpgi13143 3 51572652 to 51573150 498 CpG island CpG island 13143