Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:5122823-7153244

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2700069I18Rik 3 5177824 to 5220823 42999 - antisense lncRNA gene RIKEN cDNA 2700069I18 gene
Cpgi12947 3 5210235 to 5210508 273 CpG island CpG island 12947
Gm10748 3 5212838 to 5215216 2378 + unclassified gene predicted gene 10748
Cpgi12948 3 5218267 to 5218543 276 CpG island CpG island 12948
Tssr28265 3 5218516 to 5218544 28 + TSS region transcription start site region 28265
Zfhx4 3 5218526 to 5415857 197331 + protein coding gene zinc finger homeodomain 4
Tssr28266 3 5218546 to 5218561 15 + TSS region transcription start site region 28266
Tssr28267 3 5218563 to 5218587 24 + TSS region transcription start site region 28267
Tssr28268 3 5218590 to 5218614 24 + TSS region transcription start site region 28268
Tssr28269 3 5218629 to 5218684 55 + TSS region transcription start site region 28269
Cpgi12949 3 5218752 to 5219897 1145 CpG island CpG island 12949
Tssr28270 3 5218819 to 5218830 11 + TSS region transcription start site region 28270
Tssr28271 3 5219025 to 5219036 11 + TSS region transcription start site region 28271
Tssr28272 3 5219039 to 5219053 14 + TSS region transcription start site region 28272
Tssr28273 3 5219060 to 5219074 14 + TSS region transcription start site region 28273
Tssr32523 3 5220771 to 5220795 24 - TSS region transcription start site region 32523
Tssr28274 3 5221048 to 5221069 21 + TSS region transcription start site region 28274
Tssr28275 3 5221189 to 5221203 14 + TSS region transcription start site region 28275
Tssr28276 3 5221225 to 5221245 20 + TSS region transcription start site region 28276
D3Mit150 3 5347040 to 5347155 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 150
Tssr32524 3 5357884 to 5357928 44 - TSS region transcription start site region 32524
Tssr28277 3 5400597 to 5400624 27 + TSS region transcription start site region 28277
Tssr28278 3 5400650 to 5400662 12 + TSS region transcription start site region 28278
Tssr28279 3 5401047 to 5401051 4 + TSS region transcription start site region 28279
4930555M17Rik 3 5512995 to 5515333 2338 - lincRNA gene RIKEN cDNA 4930555M17 gene
Tssr32525 3 5515330 to 5515338 8 - TSS region transcription start site region 32525
Tssr28280 3 5515451 to 5515473 22 + TSS region transcription start site region 28280
Pex2 3 5560188 to 5576239 16051 - protein coding gene peroxisomal biogenesis factor 2
Gm6146 3 5573092 to 5577652 4560 unclassified gene predicted gene 6146
Cpgi12950 3 5575745 to 5576764 1019 CpG island CpG island 12950
Tssr28281 3 5575879 to 5575913 34 + TSS region transcription start site region 28281
Tssr32526 3 5576094 to 5576110 16 - TSS region transcription start site region 32526
Tssr32527 3 5576111 to 5576162 51 - TSS region transcription start site region 32527
Tssr32528 3 5576172 to 5576183 11 - TSS region transcription start site region 32528
Tssr32529 3 5576219 to 5576231 12 - TSS region transcription start site region 32529
Tssr32530 3 5576233 to 5576244 11 - TSS region transcription start site region 32530
Tssr28282 3 5750803 to 5750804 1 + TSS region transcription start site region 28282
Gm8797 3 5750893 to 5751295 402 + protein coding gene predicted pseudogene 8797
D3Mit117 3 5806440 to 5806615 175 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 117
Tssr28283 3 5860331 to 5860367 36 + TSS region transcription start site region 28283
Cpgi12951 3 5860625 to 5860830 205 CpG island CpG island 12951
Tssr28284 3 5860628 to 5860652 24 + TSS region transcription start site region 28284
Tssr28285 3 5860668 to 5860718 50 + TSS region transcription start site region 28285
Tssr813 3 5860696 to 5860726 30 - TSS region transcription start site region 813
Gm37350 3 5880832 to 5885503 4671 - lincRNA gene predicted gene, 37350
Gm25352 3 5881041 to 5881150 109 + miRNA gene predicted gene, 25352
Gm25144 3 5885595 to 5885704 109 + miRNA gene predicted gene, 25144
Tssr32531 3 5950466 to 5950480 14 - TSS region transcription start site region 32531
Gm46796 3 6107017 to 6115376 8359 + lncRNA gene predicted gene, 46796
Tssr28286 3 6107491 to 6107503 12 + TSS region transcription start site region 28286
Tssr28287 3 6107519 to 6107531 12 + TSS region transcription start site region 28287
Tssr28288 3 6107532 to 6107554 22 + TSS region transcription start site region 28288
C130051G18Rik 3 6111379 to 6112306 927 unclassified gene RIKEN cDNA C130051G18 gene
Cpgi12952 3 6136991 to 6137635 644 CpG island CpG island 12952
Gm17934 3 6137823 to 6138244 421 - pseudogene predicted gene, 17934
Gm6162 3 6164895 to 6167824 2929 - pseudogene predicted gene 6162
Tssr32532 3 6169801 to 6169806 5 - TSS region transcription start site region 32532
Gm38298 3 6267783 to 6267900 117 - pseudogene predicted gene, 38298
Gm41989 3 6284283 to 6287079 2796 + lncRNA gene predicted gene, 41989
Gm23147 3 6338882 to 6338991 109 - miRNA gene predicted gene, 23147
Gm18658 3 6378332 to 6378601 269 - pseudogene predicted gene, 18658
Gm5272 3 6450607 to 6451588 981 - pseudogene predicted gene 5272
Tssr32533 3 6451664 to 6451675 11 - TSS region transcription start site region 32533
Gm38291 3 6611205 to 6611463 258 - pseudogene predicted gene, 38291
1700008P02Rik 3 6615418 to 6620443 5025 - protein coding gene RIKEN cDNA 1700008P02 gene
Tssr32534 3 6620441 to 6620444 3 - TSS region transcription start site region 32534
Tssr28289 3 6620568 to 6620575 7 + TSS region transcription start site region 28289
Olfr289-ps1 3 6751704 to 6752072 368 - pseudogene olfactory receptor 289, pseudogene 1
Tssr32535 3 6785485 to 6785487 2 - TSS region transcription start site region 32535
Tssr32536 3 6800306 to 6800313 7 - TSS region transcription start site region 32536
Tssr32537 3 6802683 to 6802687 4 - TSS region transcription start site region 32537
D3Mit60 3 6808535 to 6808704 169 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 60
Tssr32538 3 6922585 to 6922589 4 - TSS region transcription start site region 32538
D3Mit269 3 6956392 to 6956516 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 269
D3Mit149 3 6960488 to 6960612 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 149
Gm22074 3 6977268 to 6977380 112 + snoRNA gene predicted gene, 22074
Gm41991 3 7042800 to 7048943 6143 + lncRNA gene predicted gene, 41991
Tssr28290 3 7133293 to 7133296 3 + TSS region transcription start site region 28290