Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:50840755-51960757

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186 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Afw13 3 50844624 to 50844807 183 QTL abdominal fat weight QTL 13
D3Mit5 3 50844624 to 50844807 183 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 5
Bwtq13 3 50844624 to 50844807 183 QTL body weight QTL 13
Gm37548 3 50883246 to 50887059 3813 - lncRNA gene predicted gene, 37548
Tssr33186 3 50887009 to 50887022 13 - TSS region transcription start site region 33186
Tssr33187 3 50887053 to 50887064 11 - TSS region transcription start site region 33187
Tssr33188 3 50888441 to 50888471 30 - TSS region transcription start site region 33188
Tssr29030 3 50901029 to 50901064 35 + TSS region transcription start site region 29030
Cpgi13130 3 50905988 to 50906320 332 CpG island CpG island 13130
Gm37843 3 50918887 to 50921525 2638 - unclassified gene predicted gene, 37843
AA672641 3 50966559 to 50966765 206 unclassified gene expressed sequence AA672641
Gm37209 3 50977536 to 50978811 1275 - unclassified gene predicted gene, 37209
D3Mit362 3 51003826 to 51004022 196 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-362
Gm35756 3 51033351 to 51042838 9487 - lncRNA gene predicted gene, 35756
Gm29230 3 51058910 to 51074856 15946 - lincRNA gene predicted gene 29230
Gm38246 3 51103660 to 51105170 1510 + lincRNA gene predicted gene, 38246
Tssr874 3 51122720 to 51122722 2 + TSS region transcription start site region 874
Gm35891 3 51126691 to 51128939 2248 - lncRNA gene predicted gene, 35891
Tssr33189 3 51210180 to 51210194 14 - TSS region transcription start site region 33189
Tssr29031 3 51210287 to 51210298 11 + TSS region transcription start site region 29031
Tssr29032 3 51210312 to 51210340 28 + TSS region transcription start site region 29032
Tssr29033 3 51210352 to 51210357 5 + TSS region transcription start site region 29033
Tssr29034 3 51210367 to 51210374 7 + TSS region transcription start site region 29034
Tssr33190 3 51211489 to 51211494 5 - TSS region transcription start site region 33190
Tssr33191 3 51211559 to 51211571 12 - TSS region transcription start site region 33191
Gm40044 3 51218475 to 51220334 1859 - lncRNA gene predicted gene, 40044
Tssr29035 3 51221189 to 51221200 11 + TSS region transcription start site region 29035
Tssr29036 3 51221203 to 51221211 8 + TSS region transcription start site region 29036
Tssr29037 3 51221231 to 51221245 14 + TSS region transcription start site region 29037
Tssr33192 3 51222350 to 51222388 38 - TSS region transcription start site region 33192
Tssr29038 3 51223838 to 51223855 17 + TSS region transcription start site region 29038
Tssr29039 3 51223899 to 51223912 13 + TSS region transcription start site region 29039
Cpgi13131 3 51224342 to 51225722 1380 CpG island CpG island 13131
Noct 3 51224447 to 51251644 27197 + protein coding gene nocturnin
Tssr29040 3 51224461 to 51224475 14 + TSS region transcription start site region 29040
Tssr29041 3 51224515 to 51224528 13 + TSS region transcription start site region 29041
Tssr29042 3 51224545 to 51224560 15 + TSS region transcription start site region 29042
Tssr33193 3 51224596 to 51224625 29 - TSS region transcription start site region 33193
Tssr29043 3 51224787 to 51224807 20 + TSS region transcription start site region 29043
Tssr29044 3 51224869 to 51224882 13 + TSS region transcription start site region 29044
Tssr29045 3 51224912 to 51224941 29 + TSS region transcription start site region 29045
Tssr29046 3 51228322 to 51228327 5 + TSS region transcription start site region 29046
Gm38357 3 51231917 to 51234380 2463 + unclassified gene predicted gene, 38357
Tssr29047 3 51232919 to 51232921 2 + TSS region transcription start site region 29047
Elf2 3 51252720 to 51340663 87943 - protein coding gene E74-like factor 2
Cpgi13132 3 51275877 to 51277801 1924 CpG island CpG island 13132
Tssr33194 3 51276026 to 51276060 34 - TSS region transcription start site region 33194
Tssr29048 3 51276257 to 51276274 17 + TSS region transcription start site region 29048
4930577N17Rik 3 51276759 to 51278383 1624 + lncRNA gene RIKEN cDNA 4930577N17 gene
Tssr29049 3 51276847 to 51276863 16 + TSS region transcription start site region 29049
Tssr33195 3 51277277 to 51277306 29 - TSS region transcription start site region 33195
Tssr33196 3 51277311 to 51277443 132 - TSS region transcription start site region 33196
Tssr33197 3 51277470 to 51277485 15 - TSS region transcription start site region 33197
Gm24282 3 51297179 to 51297244 65 + miRNA gene predicted gene, 24282
Gm37399 3 51302488 to 51302903 415 - unclassified gene predicted gene, 37399
D3Mit274 3 51316167 to 51316274 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 274
Tssr33198 3 51334284 to 51334293 9 - TSS region transcription start site region 33198
Cpgi13133 3 51339650 to 51342165 2515 CpG island CpG island 13133
Tssr29050 3 51340165 to 51340192 27 + TSS region transcription start site region 29050
Tssr29051 3 51340203 to 51340213 10 + TSS region transcription start site region 29051
Tssr33199 3 51340514 to 51340521 7 - TSS region transcription start site region 33199
Tssr33200 3 51340524 to 51340534 10 - TSS region transcription start site region 33200
Tssr33201 3 51340543 to 51340554 11 - TSS region transcription start site region 33201
Tssr33202 3 51340555 to 51340584 29 - TSS region transcription start site region 33202
Tssr33203 3 51340628 to 51340681 53 - TSS region transcription start site region 33203
Tssr33204 3 51340818 to 51340821 3 - TSS region transcription start site region 33204
Tssr29052 3 51340842 to 51340884 42 + TSS region transcription start site region 29052
n-TPtgg7 3 51358354 to 51358425 71 + tRNA gene nuclear encoded tRNA proline 7 (anticodon TGG)
Cpgi13134 3 51358632 to 51359218 586 CpG island CpG island 13134
n-TPagg5 3 51359407 to 51359478 71 + tRNA gene nuclear encoded tRNA proline 5 (anticodon AGG)
Cpgi13135 3 51365151 to 51365512 361 CpG island CpG island 13135
Gm37203 3 51370222 to 51370606 384 + pseudogene predicted gene, 37203
Gm5103 3 51378046 to 51386324 8278 + lincRNA gene predicted gene 5103
Cpgi13136 3 51378434 to 51378701 267 CpG island CpG island 13136
Mgarp 3 51388412 to 51396547 8135 - protein coding gene mitochondria localized glutamic acid rich protein
Tssr33205 3 51394897 to 51394901 4 - TSS region transcription start site region 33205
Cpgi13137 3 51396337 to 51396928 591 CpG island CpG island 13137
Tssr33206 3 51396503 to 51396526 23 - TSS region transcription start site region 33206
Tssr33207 3 51396528 to 51396551 23 - TSS region transcription start site region 33207
Tssr33208 3 51396716 to 51396757 41 - TSS region transcription start site region 33208
Tssr33209 3 51400692 to 51400720 28 - TSS region transcription start site region 33209
Tssr33210 3 51400755 to 51400757 2 - TSS region transcription start site region 33210
Gm9442 3 51402844 to 51403162 318 - pseudogene predicted gene 9442
Ndufc1 3 51405479 to 51408955 3476 - protein coding gene NADH:ubiquinone oxidoreductase subunit C1
Cpgi13138 3 51408544 to 51409090 546 CpG island CpG island 13138
Tssr33211 3 51408925 to 51408984 59 - TSS region transcription start site region 33211
Cpgi13139 3 51415654 to 51416963 1309 CpG island CpG island 13139
Tssr29053 3 51415962 to 51415973 11 + TSS region transcription start site region 29053
Tssr29054 3 51415986 to 51416044 58 + TSS region transcription start site region 29054
Naa15 3 51416016 to 51475985 59969 + protein coding gene N(alpha)-acetyltransferase 15, NatA auxiliary subunit
Tssr29055 3 51416601 to 51416613 12 + TSS region transcription start site region 29055
Tssr29056 3 51418391 to 51418394 3 + TSS region transcription start site region 29056
Gm37646 3 51423613 to 51423723 110 + unclassified gene predicted gene, 37646
Tssr29057 3 51458614 to 51458630 16 + TSS region transcription start site region 29057
Gm38160 3 51482331 to 51484829 2498 - unclassified gene predicted gene, 38160
Cpgi13140 3 51483625 to 51484884 1259 CpG island CpG island 13140
Tssr29058 3 51483945 to 51483961 16 + TSS region transcription start site region 29058
Rab33b 3 51483966 to 51496228 12262 + protein coding gene RAB33B, member RAS oncogene family
Tssr29059 3 51483969 to 51483999 30 + TSS region transcription start site region 29059
Tssr29060 3 51484184 to 51484260 76 + TSS region transcription start site region 29060
Tssr29061 3 51484275 to 51484304 29 + TSS region transcription start site region 29061
Tssr29062 3 51484319 to 51484346 27 + TSS region transcription start site region 29062
Gm37968 3 51489620 to 51492820 3200 + unclassified gene predicted gene, 37968
D3Mit134 3 51497045 to 51497145 100 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 134
D3Mit134.2 3 51497112 to 51497291 179 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 134.2
Cpgi13141 3 51505488 to 51505724 236 CpG island CpG island 13141
Gm36008 3 51510988 to 51514303 3315 + lncRNA gene predicted gene, 36008
Setd7 3 51515318 to 51560823 45505 - protein coding gene SET domain containing (lysine methyltransferase) 7
Tssr33212 3 51516254 to 51516258 4 - TSS region transcription start site region 33212
Tssr33213 3 51517757 to 51517770 13 - TSS region transcription start site region 33213
Tssr33214 3 51517853 to 51517864 11 - TSS region transcription start site region 33214
Tssr33215 3 51517933 to 51517945 12 - TSS region transcription start site region 33215
Tssr33216 3 51517952 to 51517963 11 - TSS region transcription start site region 33216
Tssr33217 3 51518353 to 51518369 16 - TSS region transcription start site region 33217
Tssr33218 3 51518627 to 51518730 103 - TSS region transcription start site region 33218
Tssr33219 3 51518794 to 51518810 16 - TSS region transcription start site region 33219
Tssr33220 3 51521335 to 51521342 7 - TSS region transcription start site region 33220
D3Ertd491e 3 51538164 to 51538369 205 DNA segment DNA segment, Chr 3, ERATO Doi 491, expressed
Tssr33221 3 51554051 to 51554060 9 - TSS region transcription start site region 33221
Tssr33222 3 51554072 to 51554083 11 - TSS region transcription start site region 33222
Tssr33223 3 51554093 to 51554102 9 - TSS region transcription start site region 33223
Gm38200 3 51557542 to 51559652 2110 - unclassified gene predicted gene, 38200
Tssr33224 3 51559581 to 51559597 16 - TSS region transcription start site region 33224
Tssr33225 3 51559620 to 51559633 13 - TSS region transcription start site region 33225
Cpgi13142 3 51559665 to 51561565 1900 CpG island CpG island 13142
Tssr29063 3 51559769 to 51559781 12 + TSS region transcription start site region 29063
Tssr29064 3 51559973 to 51559976 3 + TSS region transcription start site region 29064
5031434O11Rik 3 51560035 to 51567117 7082 + lncRNA gene RIKEN cDNA 5031434O11 gene
Tssr33226 3 51560595 to 51560686 91 - TSS region transcription start site region 33226
Tssr33227 3 51560801 to 51560809 8 - TSS region transcription start site region 33227
Tssr33228 3 51560816 to 51560875 59 - TSS region transcription start site region 33228
Tssr33229 3 51561782 to 51561818 36 - TSS region transcription start site region 33229
Tssr33230 3 51566300 to 51566303 3 - TSS region transcription start site region 33230
Gm38334 3 51571111 to 51571423 312 - pseudogene predicted gene, 38334
Cpgi13143 3 51572652 to 51573150 498 CpG island CpG island 13143
5430433H01Rik 3 51582306 to 51582847 541 + unclassified gene RIKEN cDNA 5430433H01 gene
Tssr29065 3 51590707 to 51590714 7 + TSS region transcription start site region 29065
Cpgi13144 3 51603973 to 51604187 214 CpG island CpG island 13144
Gm38247 3 51636496 to 51636928 432 - pseudogene predicted gene, 38247
Tssr875 3 51636731 to 51636752 21 + TSS region transcription start site region 875
Cpgi13145 3 51636773 to 51636964 191 CpG island CpG island 13145
D3Mit153 3 51647204 to 51647353 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 153
Tssr29066 3 51652910 to 51652931 21 + TSS region transcription start site region 29066
Tssr29067 3 51660353 to 51660364 11 + TSS region transcription start site region 29067
Mgst2 3 51660360 to 51682675 22315 + protein coding gene microsomal glutathione S-transferase 2
Tssr29068 3 51660372 to 51660375 3 + TSS region transcription start site region 29068
Tssr29069 3 51660378 to 51660395 17 + TSS region transcription start site region 29069
Tssr29070 3 51660396 to 51660406 10 + TSS region transcription start site region 29070
Tssr29071 3 51661001 to 51661005 4 + TSS region transcription start site region 29071
Tssr29072 3 51661067 to 51661070 3 + TSS region transcription start site region 29072
Tssr29073 3 51661167 to 51661189 22 + TSS region transcription start site region 29073
Tssr29074 3 51661209 to 51661250 41 + TSS region transcription start site region 29074
Tssr33231 3 51662778 to 51662798 20 - TSS region transcription start site region 33231
Tssr29075 3 51666114 to 51666130 16 + TSS region transcription start site region 29075
Gm37261 3 51672801 to 51673901 1100 + unclassified gene predicted gene, 37261
Tssr29076 3 51675150 to 51675153 3 + TSS region transcription start site region 29076
Tssr29077 3 51682613 to 51682625 12 + TSS region transcription start site region 29077
Maml3 3 51687320 to 52105086 417766 - protein coding gene mastermind like transcriptional coactivator 3
Gm10729 3 51693716 to 51695090 1374 + protein coding gene predicted gene 10729
Cpgi13146 3 51694230 to 51694737 507 CpG island CpG island 13146
Cpgi13147 3 51701436 to 51701839 403 CpG island CpG island 13147
Gm46803 3 51707717 to 51712255 4538 + lncRNA gene predicted gene, 46803
Tssr33232 3 51750859 to 51750868 9 - TSS region transcription start site region 33232
Gm37342 3 51757124 to 51762088 4964 - unclassified gene predicted gene, 37342
D3Mit119 3 51759815 to 51759955 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 119
Tssr29078 3 51765549 to 51765560 11 + TSS region transcription start site region 29078
Tssr29079 3 51765661 to 51765695 34 + TSS region transcription start site region 29079
Tssr33233 3 51788647 to 51788654 7 - TSS region transcription start site region 33233
Tssr33234 3 51788703 to 51788714 11 - TSS region transcription start site region 33234
Tssr29080 3 51788975 to 51788991 16 + TSS region transcription start site region 29080
Tssr33235 3 51789125 to 51789129 4 - TSS region transcription start site region 33235
Tssr33236 3 51796516 to 51796538 22 - TSS region transcription start site region 33236
Gm37229 3 51812951 to 51819309 6358 + antisense lncRNA gene predicted gene, 37229
Tssr33237 3 51814015 to 51814023 8 - TSS region transcription start site region 33237
n-R5s196 3 51828912 to 51829028 116 + rRNA gene nuclear encoded rRNA 5S 196
3110080O07Rik 3 51829385 to 51830405 1020 - unclassified gene RIKEN cDNA 3110080O07 gene
Gm38000 3 51867345 to 51868559 1214 - unclassified gene predicted gene, 38000
D3Mit354 3 51868220 to 51868563 343 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 354
Gm37675 3 51872990 to 51875836 2846 - unclassified gene predicted gene, 37675
Tssr33238 3 51875808 to 51875809 1 - TSS region transcription start site region 33238
Tssr29081 3 51879369 to 51879370 1 + TSS region transcription start site region 29081
Gm38252 3 51884276 to 51886891 2615 - unclassified gene predicted gene, 38252
Tssr33239 3 51903356 to 51903369 13 - TSS region transcription start site region 33239
Gm10728 3 51906986 to 51908816 1830 - pseudogene predicted gene 10728
Tssr33240 3 51930029 to 51930032 3 - TSS region transcription start site region 33240
Cpgi13148 3 51953298 to 51953472 174 CpG island CpG island 13148