Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:50487536-51468811

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mos3 3 30393206 to 50684998 20291792 heritable phenotypic marker modifier of Sox10 3
Slc7a11 3 50364936 to 50499087 134151 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
Gm6209 3 50537486 to 50607307 69821 - unclassified non-coding RNA gene predicted gene 6209
5830415G21Rik 3 50575186 to 50576517 1331 - unclassified gene RIKEN cDNA 5830415G21 gene
D3Mit182 3 50581016 to 50581166 150 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 182
Ssen2 3 50581016 to 50581166 150 QTL suseptibility to Sendai virus 2
Gm38237 3 50598069 to 50598444 375 - pseudogene predicted gene, 38237
Tssr29028 3 50606185 to 50606190 5 + TSS region transcription start site region 29028
Tssr33176 3 50607174 to 50607186 12 - TSS region transcription start site region 33176
Tssr33177 3 50607217 to 50607227 10 - TSS region transcription start site region 33177
Tssr29029 3 50616036 to 50616060 24 + TSS region transcription start site region 29029
Gm37199 3 50624347 to 50628411 4064 - unclassified gene predicted gene, 37199
Tssr33178 3 50628377 to 50628390 13 - TSS region transcription start site region 33178
Tssr33179 3 50628405 to 50628419 14 - TSS region transcription start site region 33179
Tssr33180 3 50628433 to 50628472 39 - TSS region transcription start site region 33180
Tssr33181 3 50628485 to 50628508 23 - TSS region transcription start site region 33181
Tssr33182 3 50628519 to 50628534 15 - TSS region transcription start site region 33182
Tssr33183 3 50637423 to 50637428 5 - TSS region transcription start site region 33183
Gm37461 3 50679698 to 50683401 3703 - unclassified gene predicted gene, 37461
Tssr33184 3 50683398 to 50683401 3 - TSS region transcription start site region 33184
D3Mit65 3 50684878 to 50684998 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 65
Tssr33185 3 50687306 to 50687309 3 - TSS region transcription start site region 33185
Gm40043 3 50706901 to 50711888 4987 - lncRNA gene predicted gene, 40043
Gm24503 3 50838581 to 50838715 134 - snoRNA gene predicted gene, 24503
D3Mit5 3 50844624 to 50844807 183 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 5
Afw13 3 50844624 to 50844807 183 QTL abdominal fat weight QTL 13
Bwtq13 3 50844624 to 50844807 183 QTL body weight QTL 13
Gm37548 3 50883246 to 50887059 3813 - lncRNA gene predicted gene, 37548
Tssr33186 3 50887009 to 50887022 13 - TSS region transcription start site region 33186
Tssr33187 3 50887053 to 50887064 11 - TSS region transcription start site region 33187
Tssr33188 3 50888441 to 50888471 30 - TSS region transcription start site region 33188
Tssr29030 3 50901029 to 50901064 35 + TSS region transcription start site region 29030
Cpgi13130 3 50905988 to 50906320 332 CpG island CpG island 13130
Gm37843 3 50918887 to 50921525 2638 - unclassified gene predicted gene, 37843
AA672641 3 50966559 to 50966765 206 unclassified gene expressed sequence AA672641
Gm37209 3 50977536 to 50978811 1275 - unclassified gene predicted gene, 37209
D3Mit362 3 51003826 to 51004022 196 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-362
Gm35756 3 51033351 to 51042838 9487 - lncRNA gene predicted gene, 35756
Gm29230 3 51058910 to 51074856 15946 - lincRNA gene predicted gene 29230
Gm38246 3 51103660 to 51105170 1510 + lincRNA gene predicted gene, 38246
Tssr874 3 51122720 to 51122722 2 + TSS region transcription start site region 874
Gm35891 3 51126691 to 51128939 2248 - lncRNA gene predicted gene, 35891
Tssr33189 3 51210180 to 51210194 14 - TSS region transcription start site region 33189
Tssr29031 3 51210287 to 51210298 11 + TSS region transcription start site region 29031
Tssr29032 3 51210312 to 51210340 28 + TSS region transcription start site region 29032
Tssr29033 3 51210352 to 51210357 5 + TSS region transcription start site region 29033
Tssr29034 3 51210367 to 51210374 7 + TSS region transcription start site region 29034
Tssr33190 3 51211489 to 51211494 5 - TSS region transcription start site region 33190
Tssr33191 3 51211559 to 51211571 12 - TSS region transcription start site region 33191
Gm40044 3 51218475 to 51220334 1859 - lncRNA gene predicted gene, 40044
Tssr29035 3 51221189 to 51221200 11 + TSS region transcription start site region 29035
Tssr29036 3 51221203 to 51221211 8 + TSS region transcription start site region 29036
Tssr29037 3 51221231 to 51221245 14 + TSS region transcription start site region 29037
Tssr33192 3 51222350 to 51222388 38 - TSS region transcription start site region 33192
Tssr29038 3 51223838 to 51223855 17 + TSS region transcription start site region 29038
Tssr29039 3 51223899 to 51223912 13 + TSS region transcription start site region 29039
Cpgi13131 3 51224342 to 51225722 1380 CpG island CpG island 13131
Noct 3 51224447 to 51251644 27197 + protein coding gene nocturnin
Tssr29040 3 51224461 to 51224475 14 + TSS region transcription start site region 29040
Tssr29041 3 51224515 to 51224528 13 + TSS region transcription start site region 29041
Tssr29042 3 51224545 to 51224560 15 + TSS region transcription start site region 29042
Tssr33193 3 51224596 to 51224625 29 - TSS region transcription start site region 33193
Tssr29043 3 51224787 to 51224807 20 + TSS region transcription start site region 29043
Tssr29044 3 51224869 to 51224882 13 + TSS region transcription start site region 29044
Tssr29045 3 51224912 to 51224941 29 + TSS region transcription start site region 29045
Tssr29046 3 51228322 to 51228327 5 + TSS region transcription start site region 29046
Gm38357 3 51231917 to 51234380 2463 + unclassified gene predicted gene, 38357
Tssr29047 3 51232919 to 51232921 2 + TSS region transcription start site region 29047
Elf2 3 51252720 to 51340663 87943 - protein coding gene E74-like factor 2
Cpgi13132 3 51275877 to 51277801 1924 CpG island CpG island 13132
Tssr33194 3 51276026 to 51276060 34 - TSS region transcription start site region 33194
Tssr29048 3 51276257 to 51276274 17 + TSS region transcription start site region 29048
4930577N17Rik 3 51276759 to 51278383 1624 + lncRNA gene RIKEN cDNA 4930577N17 gene
Tssr29049 3 51276847 to 51276863 16 + TSS region transcription start site region 29049
Tssr33195 3 51277277 to 51277306 29 - TSS region transcription start site region 33195
Tssr33196 3 51277311 to 51277443 132 - TSS region transcription start site region 33196
Tssr33197 3 51277470 to 51277485 15 - TSS region transcription start site region 33197
Gm24282 3 51297179 to 51297244 65 + miRNA gene predicted gene, 24282
Gm37399 3 51302488 to 51302903 415 - unclassified gene predicted gene, 37399
D3Mit274 3 51316167 to 51316274 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 274
Tssr33198 3 51334284 to 51334293 9 - TSS region transcription start site region 33198
Cpgi13133 3 51339650 to 51342165 2515 CpG island CpG island 13133
Tssr29050 3 51340165 to 51340192 27 + TSS region transcription start site region 29050
Tssr29051 3 51340203 to 51340213 10 + TSS region transcription start site region 29051
Tssr33199 3 51340514 to 51340521 7 - TSS region transcription start site region 33199
Tssr33200 3 51340524 to 51340534 10 - TSS region transcription start site region 33200
Tssr33201 3 51340543 to 51340554 11 - TSS region transcription start site region 33201
Tssr33202 3 51340555 to 51340584 29 - TSS region transcription start site region 33202
Tssr33203 3 51340628 to 51340681 53 - TSS region transcription start site region 33203
Tssr33204 3 51340818 to 51340821 3 - TSS region transcription start site region 33204
Tssr29052 3 51340842 to 51340884 42 + TSS region transcription start site region 29052
n-TPtgg7 3 51358354 to 51358425 71 + tRNA gene nuclear encoded tRNA proline 7 (anticodon TGG)
Cpgi13134 3 51358632 to 51359218 586 CpG island CpG island 13134
n-TPagg5 3 51359407 to 51359478 71 + tRNA gene nuclear encoded tRNA proline 5 (anticodon AGG)
Cpgi13135 3 51365151 to 51365512 361 CpG island CpG island 13135
Gm37203 3 51370222 to 51370606 384 + pseudogene predicted gene, 37203
Gm5103 3 51378046 to 51386324 8278 + lincRNA gene predicted gene 5103
Cpgi13136 3 51378434 to 51378701 267 CpG island CpG island 13136
Mgarp 3 51388412 to 51396547 8135 - protein coding gene mitochondria localized glutamic acid rich protein
Tssr33205 3 51394897 to 51394901 4 - TSS region transcription start site region 33205
Cpgi13137 3 51396337 to 51396928 591 CpG island CpG island 13137
Tssr33206 3 51396503 to 51396526 23 - TSS region transcription start site region 33206
Tssr33207 3 51396528 to 51396551 23 - TSS region transcription start site region 33207
Tssr33208 3 51396716 to 51396757 41 - TSS region transcription start site region 33208
Tssr33209 3 51400692 to 51400720 28 - TSS region transcription start site region 33209
Tssr33210 3 51400755 to 51400757 2 - TSS region transcription start site region 33210
Gm9442 3 51402844 to 51403162 318 - pseudogene predicted gene 9442
Ndufc1 3 51405479 to 51408955 3476 - protein coding gene NADH:ubiquinone oxidoreductase subunit C1
Cpgi13138 3 51408544 to 51409090 546 CpG island CpG island 13138
Tssr33211 3 51408925 to 51408984 59 - TSS region transcription start site region 33211
Cpgi13139 3 51415654 to 51416963 1309 CpG island CpG island 13139
Tssr29053 3 51415962 to 51415973 11 + TSS region transcription start site region 29053
Tssr29054 3 51415986 to 51416044 58 + TSS region transcription start site region 29054
Naa15 3 51416016 to 51475985 59969 + protein coding gene N(alpha)-acetyltransferase 15, NatA auxiliary subunit
Tssr29055 3 51416601 to 51416613 12 + TSS region transcription start site region 29055
Tssr29056 3 51418391 to 51418394 3 + TSS region transcription start site region 29056
Gm37646 3 51423613 to 51423723 110 + unclassified gene predicted gene, 37646
Tssr29057 3 51458614 to 51458630 16 + TSS region transcription start site region 29057