Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:49735000-52865000

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403 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mos3 3 30393206 to 50684998 20291792 heritable phenotypic marker modifier of Sox10 3
Pcdh18 3 49743296 to 49757325 14029 - protein coding gene protocadherin 18
Tssr33097 3 49743891 to 49743893 2 - TSS region transcription start site region 33097
Cpgi13128 3 49756251 to 49756587 336 CpG island CpG island 13128
Cpgi13129 3 49756960 to 49757569 609 CpG island CpG island 13129
Tssr33098 3 49757173 to 49757203 30 - TSS region transcription start site region 33098
Tssr33099 3 49757241 to 49757250 9 - TSS region transcription start site region 33099
Tssr33100 3 49757257 to 49757308 51 - TSS region transcription start site region 33100
Tssr867 3 49757316 to 49757323 7 - TSS region transcription start site region 867
Tssr868 3 49757348 to 49757355 7 - TSS region transcription start site region 868
Gm37550 3 49780425 to 49780887 462 - pseudogene predicted gene, 37550
Gm37854 3 50001972 to 50010783 8811 + antisense lncRNA gene predicted gene, 37854
Gm40042 3 50011773 to 50026243 14470 - lncRNA gene predicted gene, 40042
Gm37826 3 50029669 to 50029990 321 + pseudogene predicted gene, 37826
D3Mit64 3 50163665 to 50163794 129 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 64
Gm37692 3 50166661 to 50166892 231 - pseudogene predicted gene, 37692
Tssr869 3 50175886 to 50175887 1 + TSS region transcription start site region 869
Gm2345 3 50254855 to 50255443 588 + pseudogene predicted gene 2345
Tpcq1 3 50300000 to 52300000 2000000 QTL total plasma cholesterol QTL 1
Slc7a11 3 50364936 to 50499087 134151 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
Tssr33101 3 50366412 to 50366430 18 - TSS region transcription start site region 33101
Tssr33102 3 50366433 to 50366453 20 - TSS region transcription start site region 33102
Tssr33103 3 50366517 to 50366527 10 - TSS region transcription start site region 33103
Tssr33104 3 50366529 to 50366541 12 - TSS region transcription start site region 33104
Tssr33105 3 50366590 to 50366625 35 - TSS region transcription start site region 33105
Tssr33106 3 50366634 to 50366646 12 - TSS region transcription start site region 33106
Tssr33107 3 50366659 to 50366671 12 - TSS region transcription start site region 33107
Tssr33108 3 50366723 to 50366741 18 - TSS region transcription start site region 33108
Tssr33109 3 50366788 to 50366799 11 - TSS region transcription start site region 33109
Tssr33110 3 50366842 to 50366866 24 - TSS region transcription start site region 33110
Tssr33111 3 50366875 to 50366888 13 - TSS region transcription start site region 33111
Tssr33112 3 50366914 to 50366927 13 - TSS region transcription start site region 33112
Tssr33113 3 50366960 to 50366971 11 - TSS region transcription start site region 33113
Tssr33114 3 50366984 to 50367020 36 - TSS region transcription start site region 33114
Tssr33115 3 50367043 to 50367060 17 - TSS region transcription start site region 33115
Tssr33116 3 50367448 to 50367465 17 - TSS region transcription start site region 33116
Tssr33117 3 50367678 to 50367690 12 - TSS region transcription start site region 33117
Tssr33118 3 50367705 to 50367723 18 - TSS region transcription start site region 33118
Tssr33119 3 50367731 to 50367742 11 - TSS region transcription start site region 33119
Tssr33120 3 50368281 to 50368293 12 - TSS region transcription start site region 33120
Tssr33121 3 50368574 to 50368586 12 - TSS region transcription start site region 33121
Tssr33122 3 50368668 to 50368716 48 - TSS region transcription start site region 33122
Tssr33123 3 50369676 to 50369689 13 - TSS region transcription start site region 33123
Tssr33124 3 50377637 to 50377659 22 - TSS region transcription start site region 33124
Tssr33125 3 50381463 to 50381467 4 - TSS region transcription start site region 33125
Tssr33126 3 50396245 to 50396250 5 - TSS region transcription start site region 33126
Tssr33127 3 50398523 to 50398541 18 - TSS region transcription start site region 33127
Tssr33128 3 50398569 to 50398612 43 - TSS region transcription start site region 33128
Gm37498 3 50400282 to 50404283 4001 - unclassified gene predicted gene, 37498
Tssr33129 3 50401471 to 50401485 14 - TSS region transcription start site region 33129
Tssr870 3 50402696 to 50402707 11 + TSS region transcription start site region 870
Tssr33130 3 50406351 to 50406389 38 - TSS region transcription start site region 33130
Tssr33131 3 50406889 to 50406893 4 - TSS region transcription start site region 33131
Tssr29022 3 50407022 to 50407033 11 + TSS region transcription start site region 29022
Tssr871 3 50407051 to 50407062 11 + TSS region transcription start site region 871
Tssr33132 3 50410163 to 50410167 4 - TSS region transcription start site region 33132
Tssr33133 3 50412286 to 50412296 10 - TSS region transcription start site region 33133
Tssr29023 3 50414459 to 50414472 13 + TSS region transcription start site region 29023
Tssr33134 3 50414712 to 50414724 12 - TSS region transcription start site region 33134
Tssr33135 3 50414737 to 50414748 11 - TSS region transcription start site region 33135
Tssr33136 3 50414772 to 50414782 10 - TSS region transcription start site region 33136
Tssr33137 3 50414785 to 50414824 39 - TSS region transcription start site region 33137
Tssr33138 3 50414827 to 50414841 14 - TSS region transcription start site region 33138
Tssr33139 3 50414863 to 50414880 17 - TSS region transcription start site region 33139
Tssr33140 3 50414882 to 50414893 11 - TSS region transcription start site region 33140
Tssr33141 3 50414902 to 50414913 11 - TSS region transcription start site region 33141
Tssr33142 3 50414920 to 50414939 19 - TSS region transcription start site region 33142
Tssr33143 3 50414964 to 50414972 8 - TSS region transcription start site region 33143
Tssr872 3 50414998 to 50415001 3 - TSS region transcription start site region 872
Tssr33144 3 50415716 to 50415731 15 - TSS region transcription start site region 33144
Tssr29024 3 50415775 to 50415805 30 + TSS region transcription start site region 29024
Tssr33145 3 50416063 to 50416078 15 - TSS region transcription start site region 33145
Tssr33146 3 50417158 to 50417171 13 - TSS region transcription start site region 33146
Tssr33147 3 50417245 to 50417256 11 - TSS region transcription start site region 33147
Tssr33148 3 50417291 to 50417304 13 - TSS region transcription start site region 33148
Tssr33149 3 50417495 to 50417507 12 - TSS region transcription start site region 33149
Tssr33150 3 50417886 to 50417899 13 - TSS region transcription start site region 33150
Tssr33151 3 50417979 to 50417992 13 - TSS region transcription start site region 33151
Tssr33152 3 50418018 to 50418039 21 - TSS region transcription start site region 33152
Tssr33153 3 50419141 to 50419145 4 - TSS region transcription start site region 33153
Tssr33154 3 50429834 to 50429838 4 - TSS region transcription start site region 33154
Tssr33155 3 50429976 to 50429987 11 - TSS region transcription start site region 33155
Tssr33156 3 50431202 to 50431218 16 - TSS region transcription start site region 33156
Tssr33157 3 50434386 to 50434396 10 - TSS region transcription start site region 33157
Tssr33158 3 50435420 to 50435447 27 - TSS region transcription start site region 33158
Tssr33159 3 50436497 to 50436519 22 - TSS region transcription start site region 33159
Tssr29025 3 50436692 to 50436697 5 + TSS region transcription start site region 29025
Tssr33160 3 50438030 to 50438035 5 - TSS region transcription start site region 33160
Tssr33161 3 50438042 to 50438055 13 - TSS region transcription start site region 33161
Tssr33162 3 50438063 to 50438076 13 - TSS region transcription start site region 33162
Tssr33163 3 50438799 to 50438810 11 - TSS region transcription start site region 33163
Tssr33164 3 50438831 to 50438843 12 - TSS region transcription start site region 33164
Tssr33165 3 50439008 to 50439029 21 - TSS region transcription start site region 33165
Tssr29026 3 50439116 to 50439149 33 + TSS region transcription start site region 29026
Tssr33166 3 50442271 to 50442290 19 - TSS region transcription start site region 33166
Tssr33167 3 50442712 to 50442714 2 - TSS region transcription start site region 33167
Tssr33168 3 50443416 to 50443423 7 - TSS region transcription start site region 33168
Tssr33169 3 50443456 to 50443465 9 - TSS region transcription start site region 33169
Tssr33170 3 50443483 to 50443496 13 - TSS region transcription start site region 33170
Tssr33171 3 50443512 to 50443520 8 - TSS region transcription start site region 33171
Tssr873 3 50443512 to 50443540 28 + TSS region transcription start site region 873
Tssr33172 3 50443539 to 50443549 10 - TSS region transcription start site region 33172
Tssr33173 3 50443578 to 50443592 14 - TSS region transcription start site region 33173
Tssr33174 3 50443603 to 50443615 12 - TSS region transcription start site region 33174
Tssr29027 3 50443747 to 50443753 6 + TSS region transcription start site region 29027
Tssr33175 3 50443778 to 50443780 2 - TSS region transcription start site region 33175
Gm6209 3 50537486 to 50607307 69821 - unclassified non-coding RNA gene predicted gene 6209
5830415G21Rik 3 50575186 to 50576517 1331 - unclassified gene RIKEN cDNA 5830415G21 gene
D3Mit182 3 50581016 to 50581166 150 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 182
Ssen2 3 50581016 to 50581166 150 QTL suseptibility to Sendai virus 2
Gm38237 3 50598069 to 50598444 375 - pseudogene predicted gene, 38237
Tssr29028 3 50606185 to 50606190 5 + TSS region transcription start site region 29028
Tssr33176 3 50607174 to 50607186 12 - TSS region transcription start site region 33176
Tssr33177 3 50607217 to 50607227 10 - TSS region transcription start site region 33177
Tssr29029 3 50616036 to 50616060 24 + TSS region transcription start site region 29029
Gm37199 3 50624347 to 50628411 4064 - unclassified gene predicted gene, 37199
Tssr33178 3 50628377 to 50628390 13 - TSS region transcription start site region 33178
Tssr33179 3 50628405 to 50628419 14 - TSS region transcription start site region 33179
Tssr33180 3 50628433 to 50628472 39 - TSS region transcription start site region 33180
Tssr33181 3 50628485 to 50628508 23 - TSS region transcription start site region 33181
Tssr33182 3 50628519 to 50628534 15 - TSS region transcription start site region 33182
Tssr33183 3 50637423 to 50637428 5 - TSS region transcription start site region 33183
Gm37461 3 50679698 to 50683401 3703 - unclassified gene predicted gene, 37461
Tssr33184 3 50683398 to 50683401 3 - TSS region transcription start site region 33184
D3Mit65 3 50684878 to 50684998 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 65
Tssr33185 3 50687306 to 50687309 3 - TSS region transcription start site region 33185
Gm40043 3 50706901 to 50711888 4987 - lncRNA gene predicted gene, 40043
Gm24503 3 50838581 to 50838715 134 - snoRNA gene predicted gene, 24503
D3Mit5 3 50844624 to 50844807 183 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 5
Afw13 3 50844624 to 50844807 183 QTL abdominal fat weight QTL 13
Bwtq13 3 50844624 to 50844807 183 QTL body weight QTL 13
Gm37548 3 50883246 to 50887059 3813 - lncRNA gene predicted gene, 37548
Tssr33186 3 50887009 to 50887022 13 - TSS region transcription start site region 33186
Tssr33187 3 50887053 to 50887064 11 - TSS region transcription start site region 33187
Tssr33188 3 50888441 to 50888471 30 - TSS region transcription start site region 33188
Tssr29030 3 50901029 to 50901064 35 + TSS region transcription start site region 29030
Cpgi13130 3 50905988 to 50906320 332 CpG island CpG island 13130
Gm37843 3 50918887 to 50921525 2638 - unclassified gene predicted gene, 37843
AA672641 3 50966559 to 50966765 206 unclassified gene expressed sequence AA672641
Gm37209 3 50977536 to 50978811 1275 - unclassified gene predicted gene, 37209
D3Mit362 3 51003826 to 51004022 196 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-362
Gm35756 3 51033351 to 51042838 9487 - lncRNA gene predicted gene, 35756
Gm29230 3 51058910 to 51074856 15946 - lincRNA gene predicted gene 29230
Gm38246 3 51103660 to 51105170 1510 + lincRNA gene predicted gene, 38246
Tssr874 3 51122720 to 51122722 2 + TSS region transcription start site region 874
Gm35891 3 51126691 to 51128939 2248 - lncRNA gene predicted gene, 35891
Tssr33189 3 51210180 to 51210194 14 - TSS region transcription start site region 33189
Tssr29031 3 51210287 to 51210298 11 + TSS region transcription start site region 29031
Tssr29032 3 51210312 to 51210340 28 + TSS region transcription start site region 29032
Tssr29033 3 51210352 to 51210357 5 + TSS region transcription start site region 29033
Tssr29034 3 51210367 to 51210374 7 + TSS region transcription start site region 29034
Tssr33190 3 51211489 to 51211494 5 - TSS region transcription start site region 33190
Tssr33191 3 51211559 to 51211571 12 - TSS region transcription start site region 33191
Gm40044 3 51218475 to 51220334 1859 - lncRNA gene predicted gene, 40044
Tssr29035 3 51221189 to 51221200 11 + TSS region transcription start site region 29035
Tssr29036 3 51221203 to 51221211 8 + TSS region transcription start site region 29036
Tssr29037 3 51221231 to 51221245 14 + TSS region transcription start site region 29037
Tssr33192 3 51222350 to 51222388 38 - TSS region transcription start site region 33192
Tssr29038 3 51223838 to 51223855 17 + TSS region transcription start site region 29038
Tssr29039 3 51223899 to 51223912 13 + TSS region transcription start site region 29039
Cpgi13131 3 51224342 to 51225722 1380 CpG island CpG island 13131
Noct 3 51224447 to 51251644 27197 + protein coding gene nocturnin
Tssr29040 3 51224461 to 51224475 14 + TSS region transcription start site region 29040
Tssr29041 3 51224515 to 51224528 13 + TSS region transcription start site region 29041
Tssr29042 3 51224545 to 51224560 15 + TSS region transcription start site region 29042
Tssr33193 3 51224596 to 51224625 29 - TSS region transcription start site region 33193
Tssr29043 3 51224787 to 51224807 20 + TSS region transcription start site region 29043
Tssr29044 3 51224869 to 51224882 13 + TSS region transcription start site region 29044
Tssr29045 3 51224912 to 51224941 29 + TSS region transcription start site region 29045
Tssr29046 3 51228322 to 51228327 5 + TSS region transcription start site region 29046
Gm38357 3 51231917 to 51234380 2463 + unclassified gene predicted gene, 38357
Tssr29047 3 51232919 to 51232921 2 + TSS region transcription start site region 29047
Elf2 3 51252720 to 51340663 87943 - protein coding gene E74-like factor 2
Cpgi13132 3 51275877 to 51277801 1924 CpG island CpG island 13132
Tssr33194 3 51276026 to 51276060 34 - TSS region transcription start site region 33194
Tssr29048 3 51276257 to 51276274 17 + TSS region transcription start site region 29048
4930577N17Rik 3 51276759 to 51278383 1624 + lncRNA gene RIKEN cDNA 4930577N17 gene
Tssr29049 3 51276847 to 51276863 16 + TSS region transcription start site region 29049
Tssr33195 3 51277277 to 51277306 29 - TSS region transcription start site region 33195
Tssr33196 3 51277311 to 51277443 132 - TSS region transcription start site region 33196
Tssr33197 3 51277470 to 51277485 15 - TSS region transcription start site region 33197
Gm24282 3 51297179 to 51297244 65 + miRNA gene predicted gene, 24282
Gm37399 3 51302488 to 51302903 415 - unclassified gene predicted gene, 37399
D3Mit274 3 51316167 to 51316274 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 274
Tssr33198 3 51334284 to 51334293 9 - TSS region transcription start site region 33198
Cpgi13133 3 51339650 to 51342165 2515 CpG island CpG island 13133
Tssr29050 3 51340165 to 51340192 27 + TSS region transcription start site region 29050
Tssr29051 3 51340203 to 51340213 10 + TSS region transcription start site region 29051
Tssr33199 3 51340514 to 51340521 7 - TSS region transcription start site region 33199
Tssr33200 3 51340524 to 51340534 10 - TSS region transcription start site region 33200
Tssr33201 3 51340543 to 51340554 11 - TSS region transcription start site region 33201
Tssr33202 3 51340555 to 51340584 29 - TSS region transcription start site region 33202
Tssr33203 3 51340628 to 51340681 53 - TSS region transcription start site region 33203
Tssr33204 3 51340818 to 51340821 3 - TSS region transcription start site region 33204
Tssr29052 3 51340842 to 51340884 42 + TSS region transcription start site region 29052
n-TPtgg7 3 51358354 to 51358425 71 + tRNA gene nuclear encoded tRNA proline 7 (anticodon TGG)
Cpgi13134 3 51358632 to 51359218 586 CpG island CpG island 13134
n-TPagg5 3 51359407 to 51359478 71 + tRNA gene nuclear encoded tRNA proline 5 (anticodon AGG)
Cpgi13135 3 51365151 to 51365512 361 CpG island CpG island 13135
Gm37203 3 51370222 to 51370606 384 + pseudogene predicted gene, 37203