Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:47444080-49774111

Filter by:
50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm2229 3 47459607 to 47460302 695 - pseudogene predicted gene 2229
Opfdc2 3 47471285 to 47471285 0 QTL open field distance from center 2
D3Mit227 3 47519918 to 47520042 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 227
Tssr29013 3 47704569 to 47704572 3 + TSS region transcription start site region 29013
Gm7977 3 48026012 to 48026759 747 - pseudogene predicted gene 7977
Gm37295 3 48078341 to 48078449 108 + unclassified gene predicted gene, 37295
Tssr29014 3 48123499 to 48123500 1 + TSS region transcription start site region 29014
D3Mit296 3 48240972 to 48241090 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 296
Gm46835 3 48546416 to 48579470 33054 + lncRNA gene predicted gene, 46835
1700018B24Rik 3 48605731 to 48609100 3369 - lincRNA gene RIKEN cDNA 1700018B24 gene
Cpgi13126 3 48608832 to 48609161 329 CpG island CpG island 13126
Tssr33093 3 48609063 to 48609074 11 - TSS region transcription start site region 33093
Tssr33094 3 48609080 to 48609111 31 - TSS region transcription start site region 33094
Tssr33095 3 48609122 to 48609133 11 - TSS region transcription start site region 33095
Gm37190 3 48748510 to 48760949 12439 - lincRNA gene predicted gene, 37190
D3Mit6 3 48883405 to 48883548 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 6
Bh4p 3 48883405 to 48883548 143 QTL bar holding four paws
Gm23511 3 48954722 to 48954885 163 + snRNA gene predicted gene, 23511
Tssr29015 3 48954723 to 48954724 1 + TSS region transcription start site region 29015
Tssr866 3 49051270 to 49051272 2 + TSS region transcription start site region 866
Tssr29016 3 49062355 to 49062370 15 + TSS region transcription start site region 29016
Gm31415 3 49062378 to 49085259 22881 + lincRNA gene predicted gene, 31415
Tssr29017 3 49062422 to 49062432 10 + TSS region transcription start site region 29017
Tssr29018 3 49062434 to 49062442 8 + TSS region transcription start site region 29018
Tssr29019 3 49062448 to 49062460 12 + TSS region transcription start site region 29019
Tssr29020 3 49113957 to 49113961 4 + TSS region transcription start site region 29020
Gm37819 3 49137463 to 49138527 1064 + unclassified gene predicted gene, 37819
Gm37684 3 49207714 to 49208068 354 - pseudogene predicted gene, 37684
Tssr29021 3 49325676 to 49325692 16 + TSS region transcription start site region 29021
Gm20557 3 49344278 to 49366284 22006 + lincRNA gene predicted gene, 20557
Gm5846 3 49381333 to 49382746 1413 - pseudogene predicted gene 5846
Cpgi13127 3 49382589 to 49382815 226 CpG island CpG island 13127
Gm9683 3 49400819 to 49467436 66617 - pseudogene predicted gene 9683
Tssr33096 3 49435820 to 49435848 28 - TSS region transcription start site region 33096
Gm22480 3 49491351 to 49491478 127 + snoRNA gene predicted gene, 22480
Gm37424 3 49530750 to 49531310 560 + pseudogene predicted gene, 37424
Gm38261 3 49603561 to 49603876 315 + pseudogene predicted gene, 38261
Gm38088 3 49604227 to 49604467 240 + pseudogene predicted gene, 38088
Gm2328 3 49632468 to 49632966 498 - pseudogene predicted gene 2328
Gm29741 3 49643707 to 49644127 420 + pseudogene predicted gene, 29741
Gm23096 3 49658763 to 49658869 106 + snRNA gene predicted gene, 23096
Pcdh18 3 49743296 to 49757325 14029 - protein coding gene protocadherin 18
Tssr33097 3 49743891 to 49743893 2 - TSS region transcription start site region 33097
Cpgi13128 3 49756251 to 49756587 336 CpG island CpG island 13128
Cpgi13129 3 49756960 to 49757569 609 CpG island CpG island 13129
Tssr33098 3 49757173 to 49757203 30 - TSS region transcription start site region 33098
Tssr33099 3 49757241 to 49757250 9 - TSS region transcription start site region 33099
Tssr33100 3 49757257 to 49757308 51 - TSS region transcription start site region 33100
Tssr867 3 49757316 to 49757323 7 - TSS region transcription start site region 867
Tssr868 3 49757348 to 49757355 7 - TSS region transcription start site region 868