Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:46689080-50529111

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154 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mir6379 3 46900668 to 46900782 114 - miRNA gene microRNA 6379
Gm10356 3 47050382 to 47051639 1257 - pseudogene predicted gene 10356
Gm5274 3 47084732 to 47085734 1002 - pseudogene predicted gene 5274
Tssr29012 3 47094221 to 47094239 18 + TSS region transcription start site region 29012
Gm23891 3 47200627 to 47200764 137 + snoRNA gene predicted gene, 23891
Rpl23a-ps5 3 47230538 to 47231003 465 - pseudogene ribosomal protein L23A, pseudogene 5
Gm10730 3 47263078 to 47265800 2722 - unclassified gene predicted gene 10730
D3Mit96 3 47420722 to 47420931 209 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 96
Gm2229 3 47459607 to 47460302 695 - pseudogene predicted gene 2229
Opfdc2 3 47471285 to 47471285 0 QTL open field distance from center 2
D3Mit227 3 47519918 to 47520042 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 227
Tssr29013 3 47704569 to 47704572 3 + TSS region transcription start site region 29013
Gm7977 3 48026012 to 48026759 747 - pseudogene predicted gene 7977
Gm37295 3 48078341 to 48078449 108 + unclassified gene predicted gene, 37295
Tssr29014 3 48123499 to 48123500 1 + TSS region transcription start site region 29014
D3Mit296 3 48240972 to 48241090 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 296
Gm46835 3 48546416 to 48579470 33054 + lncRNA gene predicted gene, 46835
1700018B24Rik 3 48605731 to 48609100 3369 - lincRNA gene RIKEN cDNA 1700018B24 gene
Cpgi13126 3 48608832 to 48609161 329 CpG island CpG island 13126
Tssr33093 3 48609063 to 48609074 11 - TSS region transcription start site region 33093
Tssr33094 3 48609080 to 48609111 31 - TSS region transcription start site region 33094
Tssr33095 3 48609122 to 48609133 11 - TSS region transcription start site region 33095
Gm37190 3 48748510 to 48760949 12439 - lincRNA gene predicted gene, 37190
Bh4p 3 48883405 to 48883548 143 QTL bar holding four paws
D3Mit6 3 48883405 to 48883548 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 6
Gm23511 3 48954722 to 48954885 163 + snRNA gene predicted gene, 23511
Tssr29015 3 48954723 to 48954724 1 + TSS region transcription start site region 29015
Tssr866 3 49051270 to 49051272 2 + TSS region transcription start site region 866
Tssr29016 3 49062355 to 49062370 15 + TSS region transcription start site region 29016
Gm31415 3 49062378 to 49085259 22881 + lincRNA gene predicted gene, 31415
Tssr29017 3 49062422 to 49062432 10 + TSS region transcription start site region 29017
Tssr29018 3 49062434 to 49062442 8 + TSS region transcription start site region 29018
Tssr29019 3 49062448 to 49062460 12 + TSS region transcription start site region 29019
Tssr29020 3 49113957 to 49113961 4 + TSS region transcription start site region 29020
Gm37819 3 49137463 to 49138527 1064 + unclassified gene predicted gene, 37819
Gm37684 3 49207714 to 49208068 354 - pseudogene predicted gene, 37684
Tssr29021 3 49325676 to 49325692 16 + TSS region transcription start site region 29021
Gm20557 3 49344278 to 49366284 22006 + lincRNA gene predicted gene, 20557
Gm5846 3 49381333 to 49382746 1413 - pseudogene predicted gene 5846
Cpgi13127 3 49382589 to 49382815 226 CpG island CpG island 13127
Gm9683 3 49400819 to 49467436 66617 - pseudogene predicted gene 9683
Tssr33096 3 49435820 to 49435848 28 - TSS region transcription start site region 33096
Gm22480 3 49491351 to 49491478 127 + snoRNA gene predicted gene, 22480
Gm37424 3 49530750 to 49531310 560 + pseudogene predicted gene, 37424
Gm38261 3 49603561 to 49603876 315 + pseudogene predicted gene, 38261
Gm38088 3 49604227 to 49604467 240 + pseudogene predicted gene, 38088
Gm2328 3 49632468 to 49632966 498 - pseudogene predicted gene 2328
Gm29741 3 49643707 to 49644127 420 + pseudogene predicted gene, 29741
Gm23096 3 49658763 to 49658869 106 + snRNA gene predicted gene, 23096
Pcdh18 3 49743296 to 49757325 14029 - protein coding gene protocadherin 18
Tssr33097 3 49743891 to 49743893 2 - TSS region transcription start site region 33097
Cpgi13128 3 49756251 to 49756587 336 CpG island CpG island 13128
Cpgi13129 3 49756960 to 49757569 609 CpG island CpG island 13129
Tssr33098 3 49757173 to 49757203 30 - TSS region transcription start site region 33098
Tssr33099 3 49757241 to 49757250 9 - TSS region transcription start site region 33099
Tssr33100 3 49757257 to 49757308 51 - TSS region transcription start site region 33100
Tssr867 3 49757316 to 49757323 7 - TSS region transcription start site region 867
Tssr868 3 49757348 to 49757355 7 - TSS region transcription start site region 868
Gm37550 3 49780425 to 49780887 462 - pseudogene predicted gene, 37550
Gm37854 3 50001972 to 50010783 8811 + antisense lncRNA gene predicted gene, 37854
Gm40042 3 50011773 to 50026243 14470 - lncRNA gene predicted gene, 40042
Gm37826 3 50029669 to 50029990 321 + pseudogene predicted gene, 37826
D3Mit64 3 50163665 to 50163794 129 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 64
Gm37692 3 50166661 to 50166892 231 - pseudogene predicted gene, 37692
Tssr869 3 50175886 to 50175887 1 + TSS region transcription start site region 869
Gm2345 3 50254855 to 50255443 588 + pseudogene predicted gene 2345
Tpcq1 3 50300000 to 52300000 2000000 QTL total plasma cholesterol QTL 1
Slc7a11 3 50364936 to 50499087 134151 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
Tssr33101 3 50366412 to 50366430 18 - TSS region transcription start site region 33101
Tssr33102 3 50366433 to 50366453 20 - TSS region transcription start site region 33102
Tssr33103 3 50366517 to 50366527 10 - TSS region transcription start site region 33103
Tssr33104 3 50366529 to 50366541 12 - TSS region transcription start site region 33104
Tssr33105 3 50366590 to 50366625 35 - TSS region transcription start site region 33105
Tssr33106 3 50366634 to 50366646 12 - TSS region transcription start site region 33106
Tssr33107 3 50366659 to 50366671 12 - TSS region transcription start site region 33107
Tssr33108 3 50366723 to 50366741 18 - TSS region transcription start site region 33108
Tssr33109 3 50366788 to 50366799 11 - TSS region transcription start site region 33109
Tssr33110 3 50366842 to 50366866 24 - TSS region transcription start site region 33110
Tssr33111 3 50366875 to 50366888 13 - TSS region transcription start site region 33111
Tssr33112 3 50366914 to 50366927 13 - TSS region transcription start site region 33112
Tssr33113 3 50366960 to 50366971 11 - TSS region transcription start site region 33113
Tssr33114 3 50366984 to 50367020 36 - TSS region transcription start site region 33114
Tssr33115 3 50367043 to 50367060 17 - TSS region transcription start site region 33115
Tssr33116 3 50367448 to 50367465 17 - TSS region transcription start site region 33116
Tssr33117 3 50367678 to 50367690 12 - TSS region transcription start site region 33117
Tssr33118 3 50367705 to 50367723 18 - TSS region transcription start site region 33118
Tssr33119 3 50367731 to 50367742 11 - TSS region transcription start site region 33119
Tssr33120 3 50368281 to 50368293 12 - TSS region transcription start site region 33120
Tssr33121 3 50368574 to 50368586 12 - TSS region transcription start site region 33121
Tssr33122 3 50368668 to 50368716 48 - TSS region transcription start site region 33122
Tssr33123 3 50369676 to 50369689 13 - TSS region transcription start site region 33123
Tssr33124 3 50377637 to 50377659 22 - TSS region transcription start site region 33124
Tssr33125 3 50381463 to 50381467 4 - TSS region transcription start site region 33125
Tssr33126 3 50396245 to 50396250 5 - TSS region transcription start site region 33126
Tssr33127 3 50398523 to 50398541 18 - TSS region transcription start site region 33127
Tssr33128 3 50398569 to 50398612 43 - TSS region transcription start site region 33128
Gm37498 3 50400282 to 50404283 4001 - unclassified gene predicted gene, 37498
Tssr33129 3 50401471 to 50401485 14 - TSS region transcription start site region 33129
Tssr870 3 50402696 to 50402707 11 + TSS region transcription start site region 870
Tssr33130 3 50406351 to 50406389 38 - TSS region transcription start site region 33130
Tssr33131 3 50406889 to 50406893 4 - TSS region transcription start site region 33131
Tssr29022 3 50407022 to 50407033 11 + TSS region transcription start site region 29022
Tssr871 3 50407051 to 50407062 11 + TSS region transcription start site region 871
Tssr33132 3 50410163 to 50410167 4 - TSS region transcription start site region 33132
Tssr33133 3 50412286 to 50412296 10 - TSS region transcription start site region 33133
Tssr29023 3 50414459 to 50414472 13 + TSS region transcription start site region 29023
Tssr33134 3 50414712 to 50414724 12 - TSS region transcription start site region 33134
Tssr33135 3 50414737 to 50414748 11 - TSS region transcription start site region 33135
Tssr33136 3 50414772 to 50414782 10 - TSS region transcription start site region 33136
Tssr33137 3 50414785 to 50414824 39 - TSS region transcription start site region 33137
Tssr33138 3 50414827 to 50414841 14 - TSS region transcription start site region 33138
Tssr33139 3 50414863 to 50414880 17 - TSS region transcription start site region 33139
Tssr33140 3 50414882 to 50414893 11 - TSS region transcription start site region 33140
Tssr33141 3 50414902 to 50414913 11 - TSS region transcription start site region 33141
Tssr33142 3 50414920 to 50414939 19 - TSS region transcription start site region 33142
Tssr33143 3 50414964 to 50414972 8 - TSS region transcription start site region 33143
Tssr872 3 50414998 to 50415001 3 - TSS region transcription start site region 872
Tssr33144 3 50415716 to 50415731 15 - TSS region transcription start site region 33144
Tssr29024 3 50415775 to 50415805 30 + TSS region transcription start site region 29024
Tssr33145 3 50416063 to 50416078 15 - TSS region transcription start site region 33145
Tssr33146 3 50417158 to 50417171 13 - TSS region transcription start site region 33146
Tssr33147 3 50417245 to 50417256 11 - TSS region transcription start site region 33147
Tssr33148 3 50417291 to 50417304 13 - TSS region transcription start site region 33148
Tssr33149 3 50417495 to 50417507 12 - TSS region transcription start site region 33149
Tssr33150 3 50417886 to 50417899 13 - TSS region transcription start site region 33150
Tssr33151 3 50417979 to 50417992 13 - TSS region transcription start site region 33151
Tssr33152 3 50418018 to 50418039 21 - TSS region transcription start site region 33152
Tssr33153 3 50419141 to 50419145 4 - TSS region transcription start site region 33153
Tssr33154 3 50429834 to 50429838 4 - TSS region transcription start site region 33154
Tssr33155 3 50429976 to 50429987 11 - TSS region transcription start site region 33155
Tssr33156 3 50431202 to 50431218 16 - TSS region transcription start site region 33156
Tssr33157 3 50434386 to 50434396 10 - TSS region transcription start site region 33157
Tssr33158 3 50435420 to 50435447 27 - TSS region transcription start site region 33158
Tssr33159 3 50436497 to 50436519 22 - TSS region transcription start site region 33159
Tssr29025 3 50436692 to 50436697 5 + TSS region transcription start site region 29025
Tssr33160 3 50438030 to 50438035 5 - TSS region transcription start site region 33160
Tssr33161 3 50438042 to 50438055 13 - TSS region transcription start site region 33161
Tssr33162 3 50438063 to 50438076 13 - TSS region transcription start site region 33162
Tssr33163 3 50438799 to 50438810 11 - TSS region transcription start site region 33163
Tssr33164 3 50438831 to 50438843 12 - TSS region transcription start site region 33164
Tssr33165 3 50439008 to 50439029 21 - TSS region transcription start site region 33165
Tssr29026 3 50439116 to 50439149 33 + TSS region transcription start site region 29026
Tssr33166 3 50442271 to 50442290 19 - TSS region transcription start site region 33166
Tssr33167 3 50442712 to 50442714 2 - TSS region transcription start site region 33167
Tssr33168 3 50443416 to 50443423 7 - TSS region transcription start site region 33168
Tssr33169 3 50443456 to 50443465 9 - TSS region transcription start site region 33169
Tssr33170 3 50443483 to 50443496 13 - TSS region transcription start site region 33170
Tssr33171 3 50443512 to 50443520 8 - TSS region transcription start site region 33171
Tssr873 3 50443512 to 50443540 28 + TSS region transcription start site region 873
Tssr33172 3 50443539 to 50443549 10 - TSS region transcription start site region 33172
Tssr33173 3 50443578 to 50443592 14 - TSS region transcription start site region 33173
Tssr33174 3 50443603 to 50443615 12 - TSS region transcription start site region 33174
Tssr29027 3 50443747 to 50443753 6 + TSS region transcription start site region 29027
Tssr33175 3 50443778 to 50443780 2 - TSS region transcription start site region 33175