Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:45340544-46040904

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdmsc1 3 33273052 to 45962044 12688992 QTL modifier of muscularity 1
2610316D01Rik 3 45280439 to 45378260 97821 - lncRNA gene RIKEN cDNA 2610316D01 gene
D3Mit24 3 45368888 to 45369020 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 24
Cpgi13121 3 45375928 to 45376298 370 CpG island CpG island 13121
Tssr33087 3 45376012 to 45376016 4 - TSS region transcription start site region 33087
Cpgi13122 3 45376531 to 45377621 1090 CpG island CpG island 13122
Cpgi13123 3 45377915 to 45378614 699 CpG island CpG island 13123
Tssr33088 3 45378206 to 45378248 42 - TSS region transcription start site region 33088
Tssr33089 3 45378249 to 45378262 13 - TSS region transcription start site region 33089
Tssr29009 3 45378396 to 45378413 17 + TSS region transcription start site region 29009
Pcdh10 3 45378398 to 45434579 56181 + protein coding gene protocadherin 10
Cpgi13124 3 45379339 to 45381904 2565 CpG island CpG island 13124
6330566A10Rik 3 45385482 to 45389597 4115 unclassified gene RIKEN cDNA 6330566A10 gene
D930002L09Rik 3 45399862 to 45401998 2136 unclassified gene RIKEN cDNA D930002L09 gene
1700027H10Rik 3 45416584 to 45439309 22725 - antisense lncRNA gene RIKEN cDNA 1700027H10 gene
Tssr29010 3 45432847 to 45432874 27 + TSS region transcription start site region 29010
Gm2136 3 45438380 to 45440956 2576 + protein coding gene predicted gene 2136
Gm37345 3 45445669 to 45448806 3137 + unclassified gene predicted gene, 37345
Gm37835 3 45690544 to 45690904 360 - pseudogene predicted gene, 37835
Gm38166 3 45775424 to 45775894 470 - unclassified gene predicted gene, 38166
Gm32340 3 45775933 to 45776191 258 - pseudogene predicted gene, 32340
Tssr33090 3 45776211 to 45776219 8 - TSS region transcription start site region 33090
Gm25796 3 45817736 to 45817898 162 + snRNA gene predicted gene, 25796
Gm32416 3 45861213 to 45869952 8739 - pseudogene predicted gene, 32416
D3Mit224 3 45961912 to 45962044 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 224
hlb258 3 45962044 to 7891493 -38070551 heritable phenotypic marker heart, lung and blood 258
Gm23337 3 45978578 to 45978695 117 + snRNA gene predicted gene, 23337