Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:43745544-47635904

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdmsc1 3 33273052 to 45962044 12688992 QTL modifier of muscularity 1
Gm29739 3 43764236 to 43764764 528 - pseudogene predicted gene, 29739
Gm25714 3 43925569 to 43925864 295 + unclassified non-coding RNA gene predicted gene, 25714
Gm32175 3 43927602 to 43927947 345 - pseudogene predicted gene, 32175
Gm37746 3 43955721 to 43955918 197 + unclassified gene predicted gene, 37746
D3Mit133 3 43982864 to 43982984 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 133
Gm37365 3 44493495 to 44493903 408 - pseudogene predicted gene, 37365
Gm38128 3 44659902 to 44663151 3249 + unclassified gene predicted gene, 38128
D3Mit333 3 44707730 to 44707852 122 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 333
Gm37597 3 44718132 to 44718513 381 - pseudogene predicted gene, 37597
Gm18866 3 44725164 to 44725739 575 + pseudogene predicted gene, 18866
Gm24997 3 44983200 to 44983304 104 + snRNA gene predicted gene, 24997
Gm9679 3 45061862 to 45097781 35919 protein coding gene predicted gene 9679
Gm27989 3 45160695 to 45160801 106 + miRNA gene predicted gene, 27989
Gm21015 3 45171789 to 45173242 1453 - pseudogene predicted gene, 21015
Gm38124 3 45269987 to 45272567 2580 - unclassified gene predicted gene, 38124
5930409G06Rik 3 45273424 to 45274967 1543 - unclassified gene RIKEN cDNA 5930409G06 gene
2610316D01Rik 3 45280439 to 45378260 97821 - lncRNA gene RIKEN cDNA 2610316D01 gene
Tssr33086 3 45309877 to 45309881 4 - TSS region transcription start site region 33086
Gm36996 3 45332161 to 45332410 249 - pseudogene predicted gene, 36996
D3Mit24 3 45368888 to 45369020 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 24
Cpgi13121 3 45375928 to 45376298 370 CpG island CpG island 13121
Tssr33087 3 45376012 to 45376016 4 - TSS region transcription start site region 33087
Cpgi13122 3 45376531 to 45377621 1090 CpG island CpG island 13122
Cpgi13123 3 45377915 to 45378614 699 CpG island CpG island 13123
Tssr33088 3 45378206 to 45378248 42 - TSS region transcription start site region 33088
Tssr33089 3 45378249 to 45378262 13 - TSS region transcription start site region 33089
Tssr29009 3 45378396 to 45378413 17 + TSS region transcription start site region 29009
Pcdh10 3 45378398 to 45434579 56181 + protein coding gene protocadherin 10
Cpgi13124 3 45379339 to 45381904 2565 CpG island CpG island 13124
6330566A10Rik 3 45385482 to 45389597 4115 unclassified gene RIKEN cDNA 6330566A10 gene
D930002L09Rik 3 45399862 to 45401998 2136 unclassified gene RIKEN cDNA D930002L09 gene
1700027H10Rik 3 45416584 to 45439309 22725 - antisense lncRNA gene RIKEN cDNA 1700027H10 gene
Tssr29010 3 45432847 to 45432874 27 + TSS region transcription start site region 29010
Gm2136 3 45438380 to 45440956 2576 + protein coding gene predicted gene 2136
Gm37345 3 45445669 to 45448806 3137 + unclassified gene predicted gene, 37345
Gm37835 3 45690544 to 45690904 360 - pseudogene predicted gene, 37835
Gm38166 3 45775424 to 45775894 470 - unclassified gene predicted gene, 38166
Gm32340 3 45775933 to 45776191 258 - pseudogene predicted gene, 32340
Tssr33090 3 45776211 to 45776219 8 - TSS region transcription start site region 33090
Gm25796 3 45817736 to 45817898 162 + snRNA gene predicted gene, 25796
Gm32416 3 45861213 to 45869952 8739 - pseudogene predicted gene, 32416
D3Mit224 3 45961912 to 45962044 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 224
hlb258 3 45962044 to 7891493 -38070551 heritable phenotypic marker heart, lung and blood 258
Gm23337 3 45978578 to 45978695 117 + snRNA gene predicted gene, 23337
D3Mit95 3 46262787 to 46262910 123 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 95
Gm26081 3 46289833 to 46289964 131 + snoRNA gene predicted gene, 26081
Gm18843 3 46413412 to 46414078 666 + pseudogene predicted gene, 18843
Pabpc4l 3 46442197 to 46448219 6022 - protein coding gene poly(A) binding protein, cytoplasmic 4-like
Tssr33091 3 46445643 to 46445646 3 - TSS region transcription start site region 33091
Cpgi13125 3 46447572 to 46448058 486 CpG island CpG island 13125
Tssr33092 3 46447939 to 46447980 41 - TSS region transcription start site region 33092
Gm37445 3 46621121 to 46621362 241 + pseudogene predicted gene, 37445
Tssr29011 3 46673103 to 46673107 4 + TSS region transcription start site region 29011
Mir6379 3 46900668 to 46900782 114 - miRNA gene microRNA 6379
Gm10356 3 47050382 to 47051639 1257 - pseudogene predicted gene 10356
Gm5274 3 47084732 to 47085734 1002 - pseudogene predicted gene 5274
Tssr29012 3 47094221 to 47094239 18 + TSS region transcription start site region 29012
Gm23891 3 47200627 to 47200764 137 + snoRNA gene predicted gene, 23891
Rpl23a-ps5 3 47230538 to 47231003 465 - pseudogene ribosomal protein L23A, pseudogene 5
Gm10730 3 47263078 to 47265800 2722 - unclassified gene predicted gene 10730
D3Mit96 3 47420722 to 47420931 209 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 96
Gm2229 3 47459607 to 47460302 695 - pseudogene predicted gene 2229
Opfdc2 3 47471285 to 47471285 0 QTL open field distance from center 2
D3Mit227 3 47519918 to 47520042 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 227