Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:41538755-41878766

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr28997 3 41539240 to 41539243 3 + TSS region transcription start site region 28997
Tssr33081 3 41555536 to 41555551 15 - TSS region transcription start site region 33081
Tssr28998 3 41555696 to 41555707 11 + TSS region transcription start site region 28998
Tssr28999 3 41555723 to 41555745 22 + TSS region transcription start site region 28999
Jade1 3 41555734 to 41616864 61130 + protein coding gene jade family PHD finger 1
Cpgi13117 3 41556071 to 41556298 227 CpG island CpG island 13117
Tssr29000 3 41560687 to 41560691 4 + TSS region transcription start site region 29000
Tssr29001 3 41561715 to 41561724 9 + TSS region transcription start site region 29001
Gm31266 3 41562279 to 41563698 1419 - antisense lncRNA gene predicted gene, 31266
Cpgi13118 3 41563156 to 41564298 1142 CpG island CpG island 13118
Tssr29002 3 41563356 to 41563392 36 + TSS region transcription start site region 29002
Tssr29003 3 41563393 to 41563466 73 + TSS region transcription start site region 29003
Cpgi13119 3 41564514 to 41566407 1893 CpG island CpG island 13119
Tssr29004 3 41564872 to 41564906 34 + TSS region transcription start site region 29004
Tssr29005 3 41564921 to 41564933 12 + TSS region transcription start site region 29005
Tssr29006 3 41564997 to 41565008 11 + TSS region transcription start site region 29006
Tssr33082 3 41565509 to 41565544 35 - TSS region transcription start site region 33082
Gm40041 3 41617550 to 41623709 6159 - lncRNA gene predicted gene, 40041
Sclt1 3 41626720 to 41742514 115794 - protein coding gene sodium channel and clathrin linker 1
Gm38047 3 41648118 to 41649250 1132 - unclassified gene predicted gene, 38047
Tssr33083 3 41708755 to 41708766 11 - TSS region transcription start site region 33083
Cpgi13120 3 41741695 to 41742903 1208 CpG island CpG island 13120
Tssr33084 3 41742336 to 41742364 28 - TSS region transcription start site region 33084
Tssr33085 3 41742471 to 41742548 77 - TSS region transcription start site region 33085
D3Ertd751e 3 41742606 to 41803292 60686 + protein coding gene DNA segment, Chr 3, ERATO Doi 751, expressed
Tssr29007 3 41742637 to 41742669 32 + TSS region transcription start site region 29007
Gm37268 3 41773181 to 41775794 2613 + unclassified gene predicted gene, 37268
D3Mit306 3 41864847 to 41864971 124 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 306