Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:41435387-45065843

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm25487 3 41441343 to 41441467 124 - snoRNA gene predicted gene, 25487
Tssr33074 3 41467358 to 41467397 39 - TSS region transcription start site region 33074
Gm40040 3 41477577 to 41482391 4814 - lincRNA gene predicted gene, 40040
Gm6069 3 41485733 to 41486195 462 + pseudogene predicted gene 6069
Platr4 3 41487681 to 41493199 5518 - lincRNA gene pluripotency associated transcript 4
Tssr33075 3 41493177 to 41493202 25 - TSS region transcription start site region 33075
Tssr28993 3 41493359 to 41493364 5 + TSS region transcription start site region 28993
Tssr33076 3 41494896 to 41494905 9 - TSS region transcription start site region 33076
Tssr33077 3 41494944 to 41494951 7 - TSS region transcription start site region 33077
Tssr28994 3 41495290 to 41495296 6 + TSS region transcription start site region 28994
Tssr28995 3 41496202 to 41496231 29 + TSS region transcription start site region 28995
Tssr33078 3 41497026 to 41497047 21 - TSS region transcription start site region 33078
Tssr33079 3 41497059 to 41497075 16 - TSS region transcription start site region 33079
Tssr28996 3 41497249 to 41497259 10 + TSS region transcription start site region 28996
2400006E01Rik 3 41521247 to 41528474 7227 - lincRNA gene RIKEN cDNA 2400006E01 gene
Tssr33080 3 41522590 to 41522593 3 - TSS region transcription start site region 33080
Tssr28997 3 41539240 to 41539243 3 + TSS region transcription start site region 28997
Tssr33081 3 41555536 to 41555551 15 - TSS region transcription start site region 33081
Tssr28998 3 41555696 to 41555707 11 + TSS region transcription start site region 28998
Tssr28999 3 41555723 to 41555745 22 + TSS region transcription start site region 28999
Jade1 3 41555734 to 41616864 61130 + protein coding gene jade family PHD finger 1
Cpgi13117 3 41556071 to 41556298 227 CpG island CpG island 13117
Tssr29000 3 41560687 to 41560691 4 + TSS region transcription start site region 29000
Tssr29001 3 41561715 to 41561724 9 + TSS region transcription start site region 29001
Gm31266 3 41562279 to 41563698 1419 - antisense lncRNA gene predicted gene, 31266
Cpgi13118 3 41563156 to 41564298 1142 CpG island CpG island 13118
Tssr29002 3 41563356 to 41563392 36 + TSS region transcription start site region 29002
Tssr29003 3 41563393 to 41563466 73 + TSS region transcription start site region 29003
Cpgi13119 3 41564514 to 41566407 1893 CpG island CpG island 13119
Tssr29004 3 41564872 to 41564906 34 + TSS region transcription start site region 29004
Tssr29005 3 41564921 to 41564933 12 + TSS region transcription start site region 29005
Tssr29006 3 41564997 to 41565008 11 + TSS region transcription start site region 29006
Tssr33082 3 41565509 to 41565544 35 - TSS region transcription start site region 33082
Gm40041 3 41617550 to 41623709 6159 - lncRNA gene predicted gene, 40041
Sclt1 3 41626720 to 41742514 115794 - protein coding gene sodium channel and clathrin linker 1
Gm38047 3 41648118 to 41649250 1132 - unclassified gene predicted gene, 38047
Tssr33083 3 41708755 to 41708766 11 - TSS region transcription start site region 33083
Cpgi13120 3 41741695 to 41742903 1208 CpG island CpG island 13120
Tssr33084 3 41742336 to 41742364 28 - TSS region transcription start site region 33084
Tssr33085 3 41742471 to 41742548 77 - TSS region transcription start site region 33085
D3Ertd751e 3 41742606 to 41803292 60686 + protein coding gene DNA segment, Chr 3, ERATO Doi 751, expressed
Tssr29007 3 41742637 to 41742669 32 + TSS region transcription start site region 29007
Gm37268 3 41773181 to 41775794 2613 + unclassified gene predicted gene, 37268
D3Mit306 3 41864847 to 41864971 124 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 306
Gm7899 3 41976152 to 41978048 1896 - pseudogene predicted gene 7899
Gm37348 3 41976335 to 41978123 1788 + pseudogene predicted gene, 37348
Gm37846 3 42163865 to 42167638 3773 + unclassified gene predicted gene, 37846
Tssr864 3 42361407 to 42361415 8 + TSS region transcription start site region 864
Gm38274 3 42362630 to 42362777 147 - pseudogene predicted gene, 38274
D3Mit152 3 42530781 to 42530869 88 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 152
Gm37533 3 42572458 to 42573002 544 + unclassified gene predicted gene, 37533
Gm38044 3 42585113 to 42585599 486 - pseudogene predicted gene, 38044
Tssr865 3 42896711 to 42896713 2 + TSS region transcription start site region 865
Tssr29008 3 43082886 to 43082893 7 + TSS region transcription start site region 29008
Gm9723 3 43250387 to 43250843 456 + pseudogene predicted gene 9723
D3Mit225 3 43267601 to 43267747 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 225
Gm18865 3 43390873 to 43391923 1050 - pseudogene predicted gene, 18865
D3Nds31 3 43434610 to 43434811 201 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 31
Gm36976 3 43547173 to 43548282 1109 + unclassified gene predicted gene, 36976
Gm29739 3 43764236 to 43764764 528 - pseudogene predicted gene, 29739
Gm25714 3 43925569 to 43925864 295 + unclassified non-coding RNA gene predicted gene, 25714
Gm32175 3 43927602 to 43927947 345 - pseudogene predicted gene, 32175
Gm37746 3 43955721 to 43955918 197 + unclassified gene predicted gene, 37746
D3Mit133 3 43982864 to 43982984 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 133
Gm37365 3 44493495 to 44493903 408 - pseudogene predicted gene, 37365
Gm38128 3 44659902 to 44663151 3249 + unclassified gene predicted gene, 38128
D3Mit333 3 44707730 to 44707852 122 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 333
Gm37597 3 44718132 to 44718513 381 - pseudogene predicted gene, 37597
Gm18866 3 44725164 to 44725739 575 + pseudogene predicted gene, 18866
Gm24997 3 44983200 to 44983304 104 + snRNA gene predicted gene, 24997
Gm9679 3 45061862 to 45097781 35919 protein coding gene predicted gene 9679