Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:41380933-50171191

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdmsc1 3 33273052 to 45962044 12688992 QTL modifier of muscularity 1
1700052H01Rik 3 41354147 to 41393589 39442 + lincRNA gene RIKEN cDNA 1700052H01 gene
Tssr28992 3 41408745 to 41408766 21 + TSS region transcription start site region 28992
Tssr33073 3 41423463 to 41423468 5 - TSS region transcription start site region 33073
Gm25487 3 41441343 to 41441467 124 - snoRNA gene predicted gene, 25487
Tssr33074 3 41467358 to 41467397 39 - TSS region transcription start site region 33074
Gm40040 3 41477577 to 41482391 4814 - lincRNA gene predicted gene, 40040
Gm6069 3 41485733 to 41486195 462 + pseudogene predicted gene 6069
Platr4 3 41487681 to 41493199 5518 - lincRNA gene pluripotency associated transcript 4
Tssr33075 3 41493177 to 41493202 25 - TSS region transcription start site region 33075
Tssr28993 3 41493359 to 41493364 5 + TSS region transcription start site region 28993
Tssr33076 3 41494896 to 41494905 9 - TSS region transcription start site region 33076
Tssr33077 3 41494944 to 41494951 7 - TSS region transcription start site region 33077
Tssr28994 3 41495290 to 41495296 6 + TSS region transcription start site region 28994
Tssr28995 3 41496202 to 41496231 29 + TSS region transcription start site region 28995
Tssr33078 3 41497026 to 41497047 21 - TSS region transcription start site region 33078
Tssr33079 3 41497059 to 41497075 16 - TSS region transcription start site region 33079
Tssr28996 3 41497249 to 41497259 10 + TSS region transcription start site region 28996
2400006E01Rik 3 41521247 to 41528474 7227 - lincRNA gene RIKEN cDNA 2400006E01 gene
Tssr33080 3 41522590 to 41522593 3 - TSS region transcription start site region 33080
Tssr28997 3 41539240 to 41539243 3 + TSS region transcription start site region 28997
Tssr33081 3 41555536 to 41555551 15 - TSS region transcription start site region 33081
Tssr28998 3 41555696 to 41555707 11 + TSS region transcription start site region 28998
Tssr28999 3 41555723 to 41555745 22 + TSS region transcription start site region 28999
Jade1 3 41555734 to 41616864 61130 + protein coding gene jade family PHD finger 1
Cpgi13117 3 41556071 to 41556298 227 CpG island CpG island 13117
Tssr29000 3 41560687 to 41560691 4 + TSS region transcription start site region 29000
Tssr29001 3 41561715 to 41561724 9 + TSS region transcription start site region 29001
Gm31266 3 41562279 to 41563698 1419 - antisense lncRNA gene predicted gene, 31266
Cpgi13118 3 41563156 to 41564298 1142 CpG island CpG island 13118
Tssr29002 3 41563356 to 41563392 36 + TSS region transcription start site region 29002
Tssr29003 3 41563393 to 41563466 73 + TSS region transcription start site region 29003
Cpgi13119 3 41564514 to 41566407 1893 CpG island CpG island 13119
Tssr29004 3 41564872 to 41564906 34 + TSS region transcription start site region 29004
Tssr29005 3 41564921 to 41564933 12 + TSS region transcription start site region 29005
Tssr29006 3 41564997 to 41565008 11 + TSS region transcription start site region 29006
Tssr33082 3 41565509 to 41565544 35 - TSS region transcription start site region 33082
Gm40041 3 41617550 to 41623709 6159 - lncRNA gene predicted gene, 40041
Sclt1 3 41626720 to 41742514 115794 - protein coding gene sodium channel and clathrin linker 1
Gm38047 3 41648118 to 41649250 1132 - unclassified gene predicted gene, 38047
Tssr33083 3 41708755 to 41708766 11 - TSS region transcription start site region 33083
Cpgi13120 3 41741695 to 41742903 1208 CpG island CpG island 13120
Tssr33084 3 41742336 to 41742364 28 - TSS region transcription start site region 33084
Tssr33085 3 41742471 to 41742548 77 - TSS region transcription start site region 33085
D3Ertd751e 3 41742606 to 41803292 60686 + protein coding gene DNA segment, Chr 3, ERATO Doi 751, expressed
Tssr29007 3 41742637 to 41742669 32 + TSS region transcription start site region 29007
Gm37268 3 41773181 to 41775794 2613 + unclassified gene predicted gene, 37268
D3Mit306 3 41864847 to 41864971 124 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 306
Gm7899 3 41976152 to 41978048 1896 - pseudogene predicted gene 7899
Gm37348 3 41976335 to 41978123 1788 + pseudogene predicted gene, 37348
Gm37846 3 42163865 to 42167638 3773 + unclassified gene predicted gene, 37846
Tssr864 3 42361407 to 42361415 8 + TSS region transcription start site region 864
Gm38274 3 42362630 to 42362777 147 - pseudogene predicted gene, 38274
D3Mit152 3 42530781 to 42530869 88 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 152
Gm37533 3 42572458 to 42573002 544 + unclassified gene predicted gene, 37533
Gm38044 3 42585113 to 42585599 486 - pseudogene predicted gene, 38044
Tssr865 3 42896711 to 42896713 2 + TSS region transcription start site region 865
Tssr29008 3 43082886 to 43082893 7 + TSS region transcription start site region 29008
Gm9723 3 43250387 to 43250843 456 + pseudogene predicted gene 9723
D3Mit225 3 43267601 to 43267747 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 225
Gm18865 3 43390873 to 43391923 1050 - pseudogene predicted gene, 18865
D3Nds31 3 43434610 to 43434811 201 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 31
Gm36976 3 43547173 to 43548282 1109 + unclassified gene predicted gene, 36976
Gm29739 3 43764236 to 43764764 528 - pseudogene predicted gene, 29739
Gm25714 3 43925569 to 43925864 295 + unclassified non-coding RNA gene predicted gene, 25714
Gm32175 3 43927602 to 43927947 345 - pseudogene predicted gene, 32175
Gm37746 3 43955721 to 43955918 197 + unclassified gene predicted gene, 37746
D3Mit133 3 43982864 to 43982984 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 133
Gm37365 3 44493495 to 44493903 408 - pseudogene predicted gene, 37365
Gm38128 3 44659902 to 44663151 3249 + unclassified gene predicted gene, 38128
D3Mit333 3 44707730 to 44707852 122 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 333
Gm37597 3 44718132 to 44718513 381 - pseudogene predicted gene, 37597
Gm18866 3 44725164 to 44725739 575 + pseudogene predicted gene, 18866
Gm24997 3 44983200 to 44983304 104 + snRNA gene predicted gene, 24997
Gm9679 3 45061862 to 45097781 35919 protein coding gene predicted gene 9679
Gm27989 3 45160695 to 45160801 106 + miRNA gene predicted gene, 27989
Gm21015 3 45171789 to 45173242 1453 - pseudogene predicted gene, 21015
Gm38124 3 45269987 to 45272567 2580 - unclassified gene predicted gene, 38124
5930409G06Rik 3 45273424 to 45274967 1543 - unclassified gene RIKEN cDNA 5930409G06 gene
2610316D01Rik 3 45280439 to 45378260 97821 - lncRNA gene RIKEN cDNA 2610316D01 gene
Tssr33086 3 45309877 to 45309881 4 - TSS region transcription start site region 33086
Gm36996 3 45332161 to 45332410 249 - pseudogene predicted gene, 36996
D3Mit24 3 45368888 to 45369020 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 24
Cpgi13121 3 45375928 to 45376298 370 CpG island CpG island 13121
Tssr33087 3 45376012 to 45376016 4 - TSS region transcription start site region 33087
Cpgi13122 3 45376531 to 45377621 1090 CpG island CpG island 13122
Cpgi13123 3 45377915 to 45378614 699 CpG island CpG island 13123
Tssr33088 3 45378206 to 45378248 42 - TSS region transcription start site region 33088
Tssr33089 3 45378249 to 45378262 13 - TSS region transcription start site region 33089
Tssr29009 3 45378396 to 45378413 17 + TSS region transcription start site region 29009
Pcdh10 3 45378398 to 45434579 56181 + protein coding gene protocadherin 10
Cpgi13124 3 45379339 to 45381904 2565 CpG island CpG island 13124
6330566A10Rik 3 45385482 to 45389597 4115 unclassified gene RIKEN cDNA 6330566A10 gene
D930002L09Rik 3 45399862 to 45401998 2136 unclassified gene RIKEN cDNA D930002L09 gene
1700027H10Rik 3 45416584 to 45439309 22725 - antisense lncRNA gene RIKEN cDNA 1700027H10 gene
Tssr29010 3 45432847 to 45432874 27 + TSS region transcription start site region 29010
Gm2136 3 45438380 to 45440956 2576 + protein coding gene predicted gene 2136
Gm37345 3 45445669 to 45448806 3137 + unclassified gene predicted gene, 37345
Gm37835 3 45690544 to 45690904 360 - pseudogene predicted gene, 37835
Gm38166 3 45775424 to 45775894 470 - unclassified gene predicted gene, 38166
Gm32340 3 45775933 to 45776191 258 - pseudogene predicted gene, 32340
Tssr33090 3 45776211 to 45776219 8 - TSS region transcription start site region 33090
Gm25796 3 45817736 to 45817898 162 + snRNA gene predicted gene, 25796
Gm32416 3 45861213 to 45869952 8739 - pseudogene predicted gene, 32416
D3Mit224 3 45961912 to 45962044 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 224
hlb258 3 45962044 to 7891493 -38070551 heritable phenotypic marker heart, lung and blood 258
Gm23337 3 45978578 to 45978695 117 + snRNA gene predicted gene, 23337
D3Mit95 3 46262787 to 46262910 123 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 95
Gm26081 3 46289833 to 46289964 131 + snoRNA gene predicted gene, 26081
Gm18843 3 46413412 to 46414078 666 + pseudogene predicted gene, 18843
Pabpc4l 3 46442197 to 46448219 6022 - protein coding gene poly(A) binding protein, cytoplasmic 4-like
Tssr33091 3 46445643 to 46445646 3 - TSS region transcription start site region 33091
Cpgi13125 3 46447572 to 46448058 486 CpG island CpG island 13125
Tssr33092 3 46447939 to 46447980 41 - TSS region transcription start site region 33092
Gm37445 3 46621121 to 46621362 241 + pseudogene predicted gene, 37445
Tssr29011 3 46673103 to 46673107 4 + TSS region transcription start site region 29011
Mir6379 3 46900668 to 46900782 114 - miRNA gene microRNA 6379
Gm10356 3 47050382 to 47051639 1257 - pseudogene predicted gene 10356
Gm5274 3 47084732 to 47085734 1002 - pseudogene predicted gene 5274
Tssr29012 3 47094221 to 47094239 18 + TSS region transcription start site region 29012
Gm23891 3 47200627 to 47200764 137 + snoRNA gene predicted gene, 23891
Rpl23a-ps5 3 47230538 to 47231003 465 - pseudogene ribosomal protein L23A, pseudogene 5
Gm10730 3 47263078 to 47265800 2722 - unclassified gene predicted gene 10730
D3Mit96 3 47420722 to 47420931 209 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 96
Gm2229 3 47459607 to 47460302 695 - pseudogene predicted gene 2229
Opfdc2 3 47471285 to 47471285 0 QTL open field distance from center 2
D3Mit227 3 47519918 to 47520042 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 227
Tssr29013 3 47704569 to 47704572 3 + TSS region transcription start site region 29013
Gm7977 3 48026012 to 48026759 747 - pseudogene predicted gene 7977
Gm37295 3 48078341 to 48078449 108 + unclassified gene predicted gene, 37295
Tssr29014 3 48123499 to 48123500 1 + TSS region transcription start site region 29014
D3Mit296 3 48240972 to 48241090 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 296
Gm46835 3 48546416 to 48579470 33054 + lncRNA gene predicted gene, 46835
1700018B24Rik 3 48605731 to 48609100 3369 - lincRNA gene RIKEN cDNA 1700018B24 gene
Cpgi13126 3 48608832 to 48609161 329 CpG island CpG island 13126
Tssr33093 3 48609063 to 48609074 11 - TSS region transcription start site region 33093
Tssr33094 3 48609080 to 48609111 31 - TSS region transcription start site region 33094
Tssr33095 3 48609122 to 48609133 11 - TSS region transcription start site region 33095
Gm37190 3 48748510 to 48760949 12439 - lincRNA gene predicted gene, 37190
D3Mit6 3 48883405 to 48883548 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 6
Bh4p 3 48883405 to 48883548 143 QTL bar holding four paws
Gm23511 3 48954722 to 48954885 163 + snRNA gene predicted gene, 23511
Tssr29015 3 48954723 to 48954724 1 + TSS region transcription start site region 29015
Tssr866 3 49051270 to 49051272 2 + TSS region transcription start site region 866
Tssr29016 3 49062355 to 49062370 15 + TSS region transcription start site region 29016
Gm31415 3 49062378 to 49085259 22881 + lincRNA gene predicted gene, 31415
Tssr29017 3 49062422 to 49062432 10 + TSS region transcription start site region 29017
Tssr29018 3 49062434 to 49062442 8 + TSS region transcription start site region 29018
Tssr29019 3 49062448 to 49062460 12 + TSS region transcription start site region 29019
Tssr29020 3 49113957 to 49113961 4 + TSS region transcription start site region 29020
Gm37819 3 49137463 to 49138527 1064 + unclassified gene predicted gene, 37819
Gm37684 3 49207714 to 49208068 354 - pseudogene predicted gene, 37684
Tssr29021 3 49325676 to 49325692 16 + TSS region transcription start site region 29021
Gm20557 3 49344278 to 49366284 22006 + lincRNA gene predicted gene, 20557
Gm5846 3 49381333 to 49382746 1413 - pseudogene predicted gene 5846
Cpgi13127 3 49382589 to 49382815 226 CpG island CpG island 13127
Gm9683 3 49400819 to 49467436 66617 - pseudogene predicted gene 9683
Tssr33096 3 49435820 to 49435848 28 - TSS region transcription start site region 33096
Gm22480 3 49491351 to 49491478 127 + snoRNA gene predicted gene, 22480
Gm37424 3 49530750 to 49531310 560 + pseudogene predicted gene, 37424
Gm38261 3 49603561 to 49603876 315 + pseudogene predicted gene, 38261
Gm38088 3 49604227 to 49604467 240 + pseudogene predicted gene, 38088
Gm2328 3 49632468 to 49632966 498 - pseudogene predicted gene 2328
Gm29741 3 49643707 to 49644127 420 + pseudogene predicted gene, 29741
Gm23096 3 49658763 to 49658869 106 + snRNA gene predicted gene, 23096
Pcdh18 3 49743296 to 49757325 14029 - protein coding gene protocadherin 18
Tssr33097 3 49743891 to 49743893 2 - TSS region transcription start site region 33097
Cpgi13128 3 49756251 to 49756587 336 CpG island CpG island 13128
Cpgi13129 3 49756960 to 49757569 609 CpG island CpG island 13129
Tssr33098 3 49757173 to 49757203 30 - TSS region transcription start site region 33098
Tssr33099 3 49757241 to 49757250 9 - TSS region transcription start site region 33099
Tssr33100 3 49757257 to 49757308 51 - TSS region transcription start site region 33100
Tssr867 3 49757316 to 49757323 7 - TSS region transcription start site region 867
Tssr868 3 49757348 to 49757355 7 - TSS region transcription start site region 868
Gm37550 3 49780425 to 49780887 462 - pseudogene predicted gene, 37550
Gm37854 3 50001972 to 50010783 8811 + antisense lncRNA gene predicted gene, 37854
Gm40042 3 50011773 to 50026243 14470 - lncRNA gene predicted gene, 40042
Gm37826 3 50029669 to 50029990 321 + pseudogene predicted gene, 37826
D3Mit64 3 50163665 to 50163794 129 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 64
Gm37692 3 50166661 to 50166892 231 - pseudogene predicted gene, 37692