Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:40189843-40729844

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D3Mit94 3 40212498 to 40212608 110 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 94
Tssr28944 3 40410161 to 40410163 2 + TSS region transcription start site region 28944
Gm30184 3 40425710 to 40453799 28089 - lncRNA gene predicted gene, 30184
Gm42216 3 40458429 to 40461148 2719 + lncRNA gene predicted gene, 42216
Tssr28945 3 40459843 to 40459844 1 + TSS region transcription start site region 28945
Gm42217 3 40480897 to 40485732 4835 + lncRNA gene predicted gene, 42217
Gm46801 3 40487017 to 40489930 2913 + lncRNA gene predicted gene, 46801
1700017G19Rik 3 40504867 to 40522912 18045 - lincRNA gene RIKEN cDNA 1700017G19 gene
Tssr33065 3 40509737 to 40509782 45 - TSS region transcription start site region 33065
Gm46800 3 40509980 to 40511831 1851 + lncRNA gene predicted gene, 46800
Gm23810 3 40518818 to 40518891 73 + miRNA gene predicted gene, 23810
Tssr33066 3 40522909 to 40522918 9 - TSS region transcription start site region 33066
Tssr28946 3 40531007 to 40531029 22 + TSS region transcription start site region 28946
Tssr28947 3 40531143 to 40531156 13 + TSS region transcription start site region 28947
Cpgi13107 3 40531251 to 40532079 828 CpG island CpG island 13107
Intu 3 40531291 to 40704776 173485 + protein coding gene inturned planar cell polarity protein
Tssr28948 3 40531391 to 40531432 41 + TSS region transcription start site region 28948
Tssr28949 3 40531465 to 40531470 5 + TSS region transcription start site region 28949
Tssr28950 3 40531548 to 40531562 14 + TSS region transcription start site region 28950
Tssr28951 3 40531578 to 40531599 21 + TSS region transcription start site region 28951
Tssr28952 3 40531608 to 40531626 18 + TSS region transcription start site region 28952
Tssr28953 3 40531640 to 40531653 13 + TSS region transcription start site region 28953
Tssr28954 3 40531682 to 40531705 23 + TSS region transcription start site region 28954
Cpgi13108 3 40540600 to 40541102 502 CpG island CpG island 13108
Tssr28955 3 40540751 to 40540790 39 + TSS region transcription start site region 28955
Gm16114 3 40658867 to 40659166 299 - pseudogene predicted gene 16114
Tssr33067 3 40682548 to 40682582 34 - TSS region transcription start site region 33067
Cpgi13109 3 40683264 to 40683557 293 CpG island CpG island 13109
Cpgi13110 3 40708530 to 40709403 873 CpG island CpG island 13110
Tssr28956 3 40708859 to 40708906 47 + TSS region transcription start site region 28956
Slc25a31 3 40708871 to 40726094 17223 + protein coding gene solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31
Tssr28957 3 40708916 to 40708937 21 + TSS region transcription start site region 28957