Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:39471338-42241541

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30063 3 39460780 to 39598651 137871 + lncRNA gene predicted gene, 30063
Gm42215 3 39525522 to 39534150 8628 - lncRNA gene predicted gene, 42215
Tssr33063 3 39533910 to 39533921 11 - TSS region transcription start site region 33063
D3Mit307 3 39539052 to 39539157 105 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 307
n-R5s195 3 39635964 to 39636082 118 - rRNA gene nuclear encoded rRNA 5S 195
Gm42781 3 39636059 to 39638777 2718 + unclassified gene predicted gene 42781
Gm23796 3 39666288 to 39666447 159 + snRNA gene predicted gene, 23796
Gm46834 3 39713150 to 39725653 12503 + lncRNA gene predicted gene, 46834
Gm23831 3 39799632 to 39799716 84 - snoRNA gene predicted gene, 23831
Gm42786 3 39820481 to 39820760 279 - pseudogene predicted gene 42786
Gm42785 3 39823577 to 39827411 3834 + pseudogene predicted gene 42785
Tssr33064 3 39937416 to 39937422 6 - TSS region transcription start site region 33064
Tssr28941 3 39979736 to 39979743 7 + TSS region transcription start site region 28941
Tssr28942 3 39979777 to 39979785 8 + TSS region transcription start site region 28942
Tssr28943 3 40160354 to 40160385 31 + TSS region transcription start site region 28943
D3Mit94 3 40212498 to 40212608 110 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 94
Tssr28944 3 40410161 to 40410163 2 + TSS region transcription start site region 28944
Gm30184 3 40425710 to 40453799 28089 - lncRNA gene predicted gene, 30184
Gm42216 3 40458429 to 40461148 2719 + lncRNA gene predicted gene, 42216
Tssr28945 3 40459843 to 40459844 1 + TSS region transcription start site region 28945
Gm42217 3 40480897 to 40485732 4835 + lncRNA gene predicted gene, 42217
Gm46801 3 40487017 to 40489930 2913 + lncRNA gene predicted gene, 46801
1700017G19Rik 3 40504867 to 40522912 18045 - lincRNA gene RIKEN cDNA 1700017G19 gene
Tssr33065 3 40509737 to 40509782 45 - TSS region transcription start site region 33065
Gm46800 3 40509980 to 40511831 1851 + lncRNA gene predicted gene, 46800
Gm23810 3 40518818 to 40518891 73 + miRNA gene predicted gene, 23810
Tssr33066 3 40522909 to 40522918 9 - TSS region transcription start site region 33066
Tssr28946 3 40531007 to 40531029 22 + TSS region transcription start site region 28946
Tssr28947 3 40531143 to 40531156 13 + TSS region transcription start site region 28947
Cpgi13107 3 40531251 to 40532079 828 CpG island CpG island 13107
Intu 3 40531291 to 40704776 173485 + protein coding gene inturned planar cell polarity protein
Tssr28948 3 40531391 to 40531432 41 + TSS region transcription start site region 28948
Tssr28949 3 40531465 to 40531470 5 + TSS region transcription start site region 28949
Tssr28950 3 40531548 to 40531562 14 + TSS region transcription start site region 28950
Tssr28951 3 40531578 to 40531599 21 + TSS region transcription start site region 28951
Tssr28952 3 40531608 to 40531626 18 + TSS region transcription start site region 28952
Tssr28953 3 40531640 to 40531653 13 + TSS region transcription start site region 28953
Tssr28954 3 40531682 to 40531705 23 + TSS region transcription start site region 28954
Cpgi13108 3 40540600 to 40541102 502 CpG island CpG island 13108
Tssr28955 3 40540751 to 40540790 39 + TSS region transcription start site region 28955
Gm16114 3 40658867 to 40659166 299 - pseudogene predicted gene 16114
Tssr33067 3 40682548 to 40682582 34 - TSS region transcription start site region 33067
Cpgi13109 3 40683264 to 40683557 293 CpG island CpG island 13109
Cpgi13110 3 40708530 to 40709403 873 CpG island CpG island 13110
Tssr28956 3 40708859 to 40708906 47 + TSS region transcription start site region 28956
Slc25a31 3 40708871 to 40726094 17223 + protein coding gene solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31
Tssr28957 3 40708916 to 40708937 21 + TSS region transcription start site region 28957
Tssr28958 3 40744229 to 40744234 5 + TSS region transcription start site region 28958
Hspa4l 3 40744495 to 40796103 51608 + protein coding gene heat shock protein 4 like
Cpgi13111 3 40744614 to 40746166 1552 CpG island CpG island 13111
Tssr28959 3 40745015 to 40745041 26 + TSS region transcription start site region 28959
Tssr28960 3 40745305 to 40745317 12 + TSS region transcription start site region 28960
Tssr28961 3 40745321 to 40745324 3 + TSS region transcription start site region 28961
Tssr28962 3 40745332 to 40745345 13 + TSS region transcription start site region 28962
Tssr28963 3 40745435 to 40745459 24 + TSS region transcription start site region 28963
Tssr28964 3 40745468 to 40745498 30 + TSS region transcription start site region 28964
Tssr28965 3 40745537 to 40745632 95 + TSS region transcription start site region 28965
Tssr33068 3 40746440 to 40746450 10 - TSS region transcription start site region 33068
Tssr28966 3 40746667 to 40746670 3 + TSS region transcription start site region 28966
Tssr28967 3 40783121 to 40783141 20 + TSS region transcription start site region 28967
Tssr28968 3 40784096 to 40784099 3 + TSS region transcription start site region 28968
Tssr28969 3 40784115 to 40784169 54 + TSS region transcription start site region 28969
Tssr28970 3 40785997 to 40786004 7 + TSS region transcription start site region 28970
Tssr28971 3 40792643 to 40792656 13 + TSS region transcription start site region 28971
Cpgi13112 3 40799727 to 40800913 1186 CpG island CpG island 13112
Tssr28972 3 40800013 to 40800050 37 + TSS region transcription start site region 28972
Plk4 3 40800019 to 40816883 16864 + protein coding gene polo like kinase 4
Tssr28973 3 40800057 to 40800068 11 + TSS region transcription start site region 28973
Tssr28974 3 40800778 to 40800786 8 + TSS region transcription start site region 28974
Tssr28975 3 40810118 to 40810133 15 + TSS region transcription start site region 28975
Mfsd8 3 40818103 to 40846856 28753 - protein coding gene major facilitator superfamily domain containing 8
Cpgi13113 3 40846453 to 40847232 779 CpG island CpG island 13113
Gm2011 3 40846820 to 40875388 28568 + pseudogene predicted gene 2011
Tssr33069 3 40846847 to 40846860 13 - TSS region transcription start site region 33069
Gm10731 3 40854676 to 40855123 447 - pseudogene predicted gene 10731
D3Ertd246e 3 40856338 to 40856541 203 DNA segment DNA segment, Chr 3, ERATO Doi 246, expressed
Gm44136 3 40863948 to 40865053 1105 - unclassified gene predicted gene, 44136
Abhd18 3 40875306 to 40937736 62430 + protein coding gene abhydrolase domain containing 18
Gm44524 3 40876977 to 40877247 270 - pseudogene predicted gene 44524
6430590A07Rik 3 40885897 to 40894193 8296 - unclassified non-coding RNA gene RIKEN cDNA 6430590A07 gene
Cpgi13114 3 40893830 to 40894663 833 CpG island CpG island 13114
1700034I23Rik 3 40900199 to 40902543 2344 - protein coding gene RIKEN cDNA 1700034I23 gene
Tssr863 3 40902500 to 40902502 2 - TSS region transcription start site region 863
D3Mit226 3 40937660 to 40937793 133 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 226
Gm46802 3 40948691 to 40949863 1172 - lncRNA gene predicted gene, 46802
Cpgi13115 3 40949131 to 40951205 2074 CpG island CpG island 13115
Tssr28976 3 40949781 to 40949814 33 + TSS region transcription start site region 28976
Tssr28977 3 40949818 to 40949852 34 + TSS region transcription start site region 28977
Larp1b 3 40949828 to 41040234 90406 + protein coding gene La ribonucleoprotein domain family, member 1B
Tssr28978 3 40949915 to 40949940 25 + TSS region transcription start site region 28978
Tssr28979 3 40949945 to 40949956 11 + TSS region transcription start site region 28979
Tssr28980 3 40949963 to 40949968 5 + TSS region transcription start site region 28980
Tssr28981 3 40950402 to 40950418 16 + TSS region transcription start site region 28981
Tssr28982 3 40950638 to 40950657 19 + TSS region transcription start site region 28982
Tssr28983 3 40950779 to 40950838 59 + TSS region transcription start site region 28983
Tssr28984 3 40955036 to 40955044 8 + TSS region transcription start site region 28984
Tssr28985 3 40959542 to 40959546 4 + TSS region transcription start site region 28985
Tssr28986 3 40981484 to 40981488 4 + TSS region transcription start site region 28986
Gm22043 3 40992693 to 40992850 157 + snRNA gene predicted gene, 22043
Gm42436 3 41002434 to 41006089 3655 + unclassified gene predicted gene 42436
Gm42437 3 41005515 to 41006437 922 - unclassified gene predicted gene 42437
Tssr28987 3 41024369 to 41024384 15 + TSS region transcription start site region 28987
D3Mit63 3 41042400 to 41042511 111 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 63
Pgrmc2 3 41066326 to 41083046 16720 - protein coding gene progesterone receptor membrane component 2
D3Mit326 3 41069167 to 41069297 130 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-326
Tssr33070 3 41075189 to 41075194 5 - TSS region transcription start site region 33070
Cpgi13116 3 41082278 to 41083818 1540 CpG island CpG island 13116
Tssr33071 3 41082937 to 41082948 11 - TSS region transcription start site region 33071
Tssr33072 3 41082992 to 41083024 32 - TSS region transcription start site region 33072
Tssr28988 3 41083429 to 41083449 20 + TSS region transcription start site region 28988
Tssr28989 3 41090018 to 41090026 8 + TSS region transcription start site region 28989
Tssr28990 3 41107920 to 41107933 13 + TSS region transcription start site region 28990
Gm40038 3 41163048 to 41172663 9615 - lincRNA gene predicted gene, 40038
Gm16508 3 41286061 to 41290590 4529 - lincRNA gene predicted gene 16508
Tssr28991 3 41354141 to 41354163 22 + TSS region transcription start site region 28991
1700052H01Rik 3 41354147 to 41393589 39442 + lincRNA gene RIKEN cDNA 1700052H01 gene
Tssr28992 3 41408745 to 41408766 21 + TSS region transcription start site region 28992
Tssr33073 3 41423463 to 41423468 5 - TSS region transcription start site region 33073
Gm25487 3 41441343 to 41441467 124 - snoRNA gene predicted gene, 25487
Tssr33074 3 41467358 to 41467397 39 - TSS region transcription start site region 33074
Gm40040 3 41477577 to 41482391 4814 - lincRNA gene predicted gene, 40040
Gm6069 3 41485733 to 41486195 462 + pseudogene predicted gene 6069
Platr4 3 41487681 to 41493199 5518 - lincRNA gene pluripotency associated transcript 4
Tssr33075 3 41493177 to 41493202 25 - TSS region transcription start site region 33075
Tssr28993 3 41493359 to 41493364 5 + TSS region transcription start site region 28993
Tssr33076 3 41494896 to 41494905 9 - TSS region transcription start site region 33076
Tssr33077 3 41494944 to 41494951 7 - TSS region transcription start site region 33077
Tssr28994 3 41495290 to 41495296 6 + TSS region transcription start site region 28994
Tssr28995 3 41496202 to 41496231 29 + TSS region transcription start site region 28995
Tssr33078 3 41497026 to 41497047 21 - TSS region transcription start site region 33078
Tssr33079 3 41497059 to 41497075 16 - TSS region transcription start site region 33079
Tssr28996 3 41497249 to 41497259 10 + TSS region transcription start site region 28996
2400006E01Rik 3 41521247 to 41528474 7227 - lincRNA gene RIKEN cDNA 2400006E01 gene
Tssr33080 3 41522590 to 41522593 3 - TSS region transcription start site region 33080
Tssr28997 3 41539240 to 41539243 3 + TSS region transcription start site region 28997
Tssr33081 3 41555536 to 41555551 15 - TSS region transcription start site region 33081
Tssr28998 3 41555696 to 41555707 11 + TSS region transcription start site region 28998
Tssr28999 3 41555723 to 41555745 22 + TSS region transcription start site region 28999
Jade1 3 41555734 to 41616864 61130 + protein coding gene jade family PHD finger 1
Cpgi13117 3 41556071 to 41556298 227 CpG island CpG island 13117
Tssr29000 3 41560687 to 41560691 4 + TSS region transcription start site region 29000
Tssr29001 3 41561715 to 41561724 9 + TSS region transcription start site region 29001
Gm31266 3 41562279 to 41563698 1419 - antisense lncRNA gene predicted gene, 31266
Cpgi13118 3 41563156 to 41564298 1142 CpG island CpG island 13118
Tssr29002 3 41563356 to 41563392 36 + TSS region transcription start site region 29002
Tssr29003 3 41563393 to 41563466 73 + TSS region transcription start site region 29003
Cpgi13119 3 41564514 to 41566407 1893 CpG island CpG island 13119
Tssr29004 3 41564872 to 41564906 34 + TSS region transcription start site region 29004
Tssr29005 3 41564921 to 41564933 12 + TSS region transcription start site region 29005
Tssr29006 3 41564997 to 41565008 11 + TSS region transcription start site region 29006
Tssr33082 3 41565509 to 41565544 35 - TSS region transcription start site region 33082
Gm40041 3 41617550 to 41623709 6159 - lncRNA gene predicted gene, 40041
Sclt1 3 41626720 to 41742514 115794 - protein coding gene sodium channel and clathrin linker 1
Gm38047 3 41648118 to 41649250 1132 - unclassified gene predicted gene, 38047
Tssr33083 3 41708755 to 41708766 11 - TSS region transcription start site region 33083
Cpgi13120 3 41741695 to 41742903 1208 CpG island CpG island 13120
Tssr33084 3 41742336 to 41742364 28 - TSS region transcription start site region 33084
Tssr33085 3 41742471 to 41742548 77 - TSS region transcription start site region 33085
D3Ertd751e 3 41742606 to 41803292 60686 + protein coding gene DNA segment, Chr 3, ERATO Doi 751, expressed
Tssr29007 3 41742637 to 41742669 32 + TSS region transcription start site region 29007
Gm37268 3 41773181 to 41775794 2613 + unclassified gene predicted gene, 37268
D3Mit306 3 41864847 to 41864971 124 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 306
Gm7899 3 41976152 to 41978048 1896 - pseudogene predicted gene 7899
Gm37348 3 41976335 to 41978123 1788 + pseudogene predicted gene, 37348
Gm37846 3 42163865 to 42167638 3773 + unclassified gene predicted gene, 37846
Bmiq5 3 116000000 to 41000000 -75000000 QTL body mass index QTL 5