Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:39034632-40564716

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D3Mit3 3 39047078 to 39047179 101 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 3
Gm43308 3 39128533 to 39128905 372 - pseudogene predicted gene 43308
Gm30011 3 39150832 to 39159670 8838 - lncRNA gene predicted gene, 30011
Gm43008 3 39217561 to 39217846 285 - pseudogene predicted gene 43008
Gm42214 3 39277131 to 39305932 28801 + lncRNA gene predicted gene, 42214
Gm9845 3 39358306 to 39358903 597 - pseudogene predicted pseudogene 9845
Tssr33062 3 39359156 to 39359160 4 - TSS region transcription start site region 33062
Tssr28940 3 39364563 to 39364565 2 + TSS region transcription start site region 28940
Gm20566 3 39443893 to 39444348 455 + pseudogene predicted gene, 20566
Gm30063 3 39460780 to 39598651 137871 + lncRNA gene predicted gene, 30063
Gm42215 3 39525522 to 39534150 8628 - lncRNA gene predicted gene, 42215
Tssr33063 3 39533910 to 39533921 11 - TSS region transcription start site region 33063
D3Mit307 3 39539052 to 39539157 105 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 307
n-R5s195 3 39635964 to 39636082 118 - rRNA gene nuclear encoded rRNA 5S 195
Gm42781 3 39636059 to 39638777 2718 + unclassified gene predicted gene 42781
Gm23796 3 39666288 to 39666447 159 + snRNA gene predicted gene, 23796
Gm46834 3 39713150 to 39725653 12503 + lncRNA gene predicted gene, 46834
Gm23831 3 39799632 to 39799716 84 - snoRNA gene predicted gene, 23831
Gm42786 3 39820481 to 39820760 279 - pseudogene predicted gene 42786
Gm42785 3 39823577 to 39827411 3834 + pseudogene predicted gene 42785
Tssr33064 3 39937416 to 39937422 6 - TSS region transcription start site region 33064
Tssr28941 3 39979736 to 39979743 7 + TSS region transcription start site region 28941
Tssr28942 3 39979777 to 39979785 8 + TSS region transcription start site region 28942
Tssr28943 3 40160354 to 40160385 31 + TSS region transcription start site region 28943
D3Mit94 3 40212498 to 40212608 110 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 94
Tssr28944 3 40410161 to 40410163 2 + TSS region transcription start site region 28944
Gm30184 3 40425710 to 40453799 28089 - lncRNA gene predicted gene, 30184
Gm42216 3 40458429 to 40461148 2719 + lncRNA gene predicted gene, 42216
Tssr28945 3 40459843 to 40459844 1 + TSS region transcription start site region 28945
Gm42217 3 40480897 to 40485732 4835 + lncRNA gene predicted gene, 42217
Gm46801 3 40487017 to 40489930 2913 + lncRNA gene predicted gene, 46801
1700017G19Rik 3 40504867 to 40522912 18045 - lincRNA gene RIKEN cDNA 1700017G19 gene
Tssr33065 3 40509737 to 40509782 45 - TSS region transcription start site region 33065
Gm46800 3 40509980 to 40511831 1851 + lncRNA gene predicted gene, 46800
Gm23810 3 40518818 to 40518891 73 + miRNA gene predicted gene, 23810
Tssr33066 3 40522909 to 40522918 9 - TSS region transcription start site region 33066
Tssr28946 3 40531007 to 40531029 22 + TSS region transcription start site region 28946
Tssr28947 3 40531143 to 40531156 13 + TSS region transcription start site region 28947
Cpgi13107 3 40531251 to 40532079 828 CpG island CpG island 13107
Intu 3 40531291 to 40704776 173485 + protein coding gene inturned planar cell polarity protein
Tssr28948 3 40531391 to 40531432 41 + TSS region transcription start site region 28948
Tssr28949 3 40531465 to 40531470 5 + TSS region transcription start site region 28949
Tssr28950 3 40531548 to 40531562 14 + TSS region transcription start site region 28950
Tssr28951 3 40531578 to 40531599 21 + TSS region transcription start site region 28951
Tssr28952 3 40531608 to 40531626 18 + TSS region transcription start site region 28952
Tssr28953 3 40531640 to 40531653 13 + TSS region transcription start site region 28953
Tssr28954 3 40531682 to 40531705 23 + TSS region transcription start site region 28954
Cpgi13108 3 40540600 to 40541102 502 CpG island CpG island 13108
Tssr28955 3 40540751 to 40540790 39 + TSS region transcription start site region 28955