Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:37729398-39013636

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm36620 3 37724227 to 37741319 17092 + lncRNA gene predicted gene, 36620
Tssr28924 3 37734700 to 37734712 12 + TSS region transcription start site region 28924
Rpl31-ps15 3 37734730 to 37735104 374 + pseudogene ribosomal protein L31, pseudogene 15
Gm42210 3 37753201 to 37774398 21197 + lncRNA gene predicted gene, 42210
Tssr28925 3 37753433 to 37753441 8 + TSS region transcription start site region 28925
Gm42921 3 37761037 to 37767297 6260 + lincRNA gene predicted gene 42921
Tssr28926 3 37761215 to 37761233 18 + TSS region transcription start site region 28926
Gm26404 3 37802544 to 37802652 108 - snoRNA gene predicted gene, 26404
4930556A17Rik 3 37828218 to 37848291 20073 + lncRNA gene RIKEN cDNA 4930556A17 gene
D3Nds40 3 37834305 to 37834710 405 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 40
Gm42752 3 37838468 to 37839573 1105 + unclassified gene predicted gene 42752
Gm42753 3 37841798 to 37843065 1267 + unclassified gene predicted gene 42753
D3Nds41 3 37880010 to 37880169 159 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 41
D3Nds48 3 37880020 to 37880175 155 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 48
D3Mit332 3 37880031 to 37880142 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 332
Gm20755 3 37898813 to 37992728 93915 + lincRNA gene predicted gene, 20755
Gm7799 3 37959612 to 37960087 475 - pseudogene predicted gene 7799
Gm42751 3 37982792 to 37983350 558 + unclassified gene predicted gene 42751
Gm22899 3 37995105 to 37995235 130 - snoRNA gene predicted gene, 22899
Gm43821 3 38094629 to 38130191 35562 - lincRNA gene predicted gene 43821
Rpl21-ps10 3 38107443 to 38107922 479 - pseudogene ribosomal protein L21, pseudogene 10
Elyms2 3 38145449 to 38145449 0 QTL ENU induced lymphoma susceptibility 2
D3Mit169 3 38151018 to 38151217 199 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 169
Gm36680 3 38151906 to 38159148 7242 + lncRNA gene predicted gene, 36680
D3Nds42 3 38200406 to 38200692 286 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 42
D3Nds43 3 38200746 to 38200895 149 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 43
5430434I15Rik 3 38203151 to 38208119 4968 - lincRNA gene RIKEN cDNA 5430434I15 gene
Gm2965 3 38223451 to 38223793 342 + pseudogene predicted gene 2965
Tssr28927 3 38223563 to 38223575 12 + TSS region transcription start site region 28927
Cpgi13103 3 38228268 to 38228485 217 CpG island CpG island 13103
Gm17955 3 38254024 to 38254803 779 + pseudogene predicted gene, 17955
Tssr862 3 38258857 to 38258860 3 + TSS region transcription start site region 862
Gm25574 3 38267836 to 38268084 248 - unclassified non-coding RNA gene predicted gene, 25574
D3Nds44 3 38296336 to 38296501 165 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 44
Gm42213 3 38366152 to 38368881 2729 - lncRNA gene predicted gene, 42213
Gm42920 3 38369398 to 38373636 4238 + lincRNA gene predicted gene 42920
3830422I06Rik 3 38418971 to 38420151 1180 - unclassified gene RIKEN cDNA 3830422I06 gene
Gm36823 3 38427135 to 38443874 16739 - lincRNA gene predicted gene, 36823
Tssr28928 3 38438657 to 38438658 1 + TSS region transcription start site region 28928
Gm7815 3 38438962 to 38439793 831 - pseudogene predicted gene 7815
Ankrd50 3 38449259 to 38484844 35585 - protein coding gene ankyrin repeat domain 50
Cpgi13104 3 38484295 to 38485406 1111 CpG island CpG island 13104
Tssr33057 3 38484779 to 38484791 12 - TSS region transcription start site region 33057
Tssr33058 3 38484802 to 38484822 20 - TSS region transcription start site region 33058
Tssr33059 3 38484831 to 38484864 33 - TSS region transcription start site region 33059
Tssr28929 3 38485195 to 38485211 16 + TSS region transcription start site region 28929
Gm24462 3 38558109 to 38558214 105 - miRNA gene predicted gene, 24462
Gm7824 3 38558137 to 38558668 531 - pseudogene predicted gene 7824
Tssr33060 3 38558856 to 38558861 5 - TSS region transcription start site region 33060
Gm43538 3 38614247 to 38615558 1311 + lincRNA gene predicted gene 43538
Gm29879 3 38663608 to 38709223 45615 + lncRNA gene predicted gene, 29879
Gm29959 3 38760483 to 38761949 1466 - lncRNA gene predicted gene, 29959
C230034O21Rik 3 38880583 to 38886340 5757 - antisense lncRNA gene RIKEN cDNA C230034O21 gene
Cpgi13105 3 38884982 to 38888522 3540 CpG island CpG island 13105
Tssr28930 3 38885312 to 38885331 19 + TSS region transcription start site region 28930
Tssr28931 3 38885683 to 38885702 19 + TSS region transcription start site region 28931
Tssr28932 3 38885710 to 38885728 18 + TSS region transcription start site region 28932
Tssr28933 3 38885742 to 38885764 22 + TSS region transcription start site region 28933
Tssr28934 3 38885843 to 38885854 11 + TSS region transcription start site region 28934
Tssr28935 3 38885876 to 38885887 11 + TSS region transcription start site region 28935
Tssr28936 3 38885888 to 38885905 17 + TSS region transcription start site region 28936
Fat4 3 38886940 to 39011985 125045 + protein coding gene FAT atypical cadherin 4
Tssr28937 3 38902005 to 38902008 3 + TSS region transcription start site region 28937
D3Mit295 3 38928541 to 38928642 101 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 295
Cpgi13106 3 38983491 to 38983765 274 CpG island CpG island 13106
Gm43539 3 39008602 to 39009681 1079 - antisense lncRNA gene predicted gene 43539
Tssr33061 3 39009700 to 39009708 8 - TSS region transcription start site region 33061
Tssr28938 3 39009826 to 39009838 12 + TSS region transcription start site region 28938
Tssr28939 3 39011789 to 39011793 4 + TSS region transcription start site region 28939