Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:37574765-37734778

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spata5 3 37419950 to 37579096 159146 + protein coding gene spermatogenesis associated 5
Gm36412 3 37541876 to 37602389 60513 - lncRNA gene predicted gene, 36412
Gm12565 3 37599427 to 37600072 645 - pseudogene predicted gene 12565
Tssr33053 3 37600237 to 37600244 7 - TSS region transcription start site region 33053
Cpgi13099 3 37605840 to 37606075 235 CpG island CpG island 13099
Tssr28907 3 37613911 to 37613927 16 + TSS region transcription start site region 28907
4930594O21Rik 3 37613913 to 37615276 1363 + lincRNA gene RIKEN cDNA 4930594O21 gene
Gm42922 3 37638579 to 37640656 2077 - unclassified gene predicted gene 42922
Tssr28908 3 37639664 to 37639693 29 + TSS region transcription start site region 28908
Cpgi13100 3 37639681 to 37641416 1735 CpG island CpG island 13100
Tssr28909 3 37639905 to 37639912 7 + TSS region transcription start site region 28909
Tssr28910 3 37639928 to 37639943 15 + TSS region transcription start site region 28910
Tssr28911 3 37639945 to 37639964 19 + TSS region transcription start site region 28911
Spry1 3 37639947 to 37644598 4651 + protein coding gene sprouty RTK signaling antagonist 1
Tssr28912 3 37639985 to 37639986 1 + TSS region transcription start site region 28912
Tssr28913 3 37643266 to 37643280 14 + TSS region transcription start site region 28913
Tssr28914 3 37643724 to 37643745 21 + TSS region transcription start site region 28914
Tssr28915 3 37644027 to 37644036 9 + TSS region transcription start site region 28915
Tssr28916 3 37644132 to 37644144 12 + TSS region transcription start site region 28916
Gm43820 3 37644607 to 37647952 3345 + unclassified gene predicted gene 43820
Tssr28917 3 37644819 to 37644823 4 + TSS region transcription start site region 28917
Gm46799 3 37652680 to 37656517 3837 - lncRNA gene predicted gene, 46799
Tssr28918 3 37654414 to 37654431 17 + TSS region transcription start site region 28918
Tssr28919 3 37654477 to 37654505 28 + TSS region transcription start site region 28919
Tssr28920 3 37654765 to 37654778 13 + TSS region transcription start site region 28920
Tssr28921 3 37656018 to 37656027 9 + TSS region transcription start site region 28921
Tssr28922 3 37668815 to 37668834 19 + TSS region transcription start site region 28922
Cpgi13101 3 37669005 to 37669338 333 CpG island CpG island 13101
Tssr33054 3 37672419 to 37672425 6 - TSS region transcription start site region 33054
Gm42211 3 37690464 to 37694856 4392 - lncRNA gene predicted gene, 42211
Tssr33055 3 37707413 to 37707415 2 - TSS region transcription start site region 33055
Gm43414 3 37708021 to 37711208 3187 + unclassified gene predicted gene 43414
Gm5148 3 37714190 to 37724360 10170 - protein coding gene predicted gene 5148
Tssr28923 3 37714708 to 37714709 1 + TSS region transcription start site region 28923
Rps23-ps1 3 37714740 to 37715164 424 + pseudogene ribosomal protein S23, pseudogene 1
Gm36620 3 37724227 to 37741319 17092 + lncRNA gene predicted gene, 36620
Cpgi13102 3 37724259 to 37724667 408 CpG island CpG island 13102
Tssr33056 3 37724321 to 37724338 17 - TSS region transcription start site region 33056
Tssr28924 3 37734700 to 37734712 12 + TSS region transcription start site region 28924
Rpl31-ps15 3 37734730 to 37735104 374 + pseudogene ribosomal protein L31, pseudogene 15