Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:36405845-36936735

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42209 3 36354218 to 36406508 52290 - lncRNA gene predicted gene, 42209
Tssr33021 3 36406377 to 36406388 11 - TSS region transcription start site region 33021
Gm17887 3 36421594 to 36422124 530 + pseudogene predicted gene, 17887
Anxa5 3 36448923 to 36475887 26964 - protein coding gene annexin A5
Tssr33022 3 36449346 to 36449363 17 - TSS region transcription start site region 33022
Tssr33023 3 36450661 to 36450705 44 - TSS region transcription start site region 33023
Tssr33024 3 36453497 to 36453537 40 - TSS region transcription start site region 33024
Tssr28867 3 36453511 to 36453542 31 + TSS region transcription start site region 28867
Tssr33025 3 36453539 to 36453593 54 - TSS region transcription start site region 33025
Tssr28868 3 36453882 to 36453941 59 + TSS region transcription start site region 28868
Tssr33026 3 36461971 to 36462001 30 - TSS region transcription start site region 33026
Tssr28869 3 36467762 to 36467773 11 + TSS region transcription start site region 28869
Tssr33027 3 36468920 to 36468948 28 - TSS region transcription start site region 33027
Tssr33028 3 36468952 to 36468965 13 - TSS region transcription start site region 33028
Tssr28870 3 36469240 to 36469248 8 + TSS region transcription start site region 28870
Tssr33029 3 36474526 to 36474530 4 - TSS region transcription start site region 33029
Cpgi13083 3 36475217 to 36476147 930 CpG island CpG island 13083
Mir7009 3 36475461 to 36475524 63 - miRNA gene microRNA 7009
Tssr33030 3 36475604 to 36475675 71 - TSS region transcription start site region 33030
Tssr33031 3 36475688 to 36475705 17 - TSS region transcription start site region 33031
Tssr28871 3 36475932 to 36475959 27 + TSS region transcription start site region 28871
1810062G17Rik 3 36475937 to 36482299 6362 + protein coding gene RIKEN cDNA 1810062G17 gene
Tssr28872 3 36475986 to 36476021 35 + TSS region transcription start site region 28872
Jobes1b 3 36480000 to 36850000 370000 QTL juvenile obesity 1b
Gm11548 3 36499804 to 36506809 7005 - lincRNA gene predicted gene 11548
Gm11549 3 36515057 to 36521445 6388 - lincRNA gene predicted gene 11549
Cpgi13084 3 36521107 to 36521922 815 CpG island CpG island 13084
Tssr33032 3 36521391 to 36521416 25 - TSS region transcription start site region 33032
Tssr33033 3 36521809 to 36521820 11 - TSS region transcription start site region 33033
Gm43537 3 36529222 to 36532331 3109 - unclassified gene predicted gene 43537
Cpgi13085 3 36532180 to 36532348 168 CpG island CpG island 13085
Gm11550 3 36539383 to 36540081 698 - pseudogene predicted gene 11550
Cpgi13086 3 36552394 to 36552975 581 CpG island CpG island 13086
Tssr28873 3 36552600 to 36552677 77 + TSS region transcription start site region 28873
Exosc9 3 36552606 to 36565727 13121 + protein coding gene exosome component 9
Ccna2 3 36564865 to 36572150 7285 - protein coding gene cyclin A2
Tssr33034 3 36565310 to 36565315 5 - TSS region transcription start site region 33034
D3Nds36 3 36565461 to 36565672 211 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 36
Tssr33035 3 36567904 to 36567928 24 - TSS region transcription start site region 33035
Cpgi13087 3 36571263 to 36572429 1166 CpG island CpG island 13087
Tssr33036 3 36571918 to 36571931 13 - TSS region transcription start site region 33036
Tssr33037 3 36571952 to 36572003 51 - TSS region transcription start site region 33037
Bbs7 3 36573142 to 36613477 40335 - protein coding gene Bardet-Biedl syndrome 7 (human)
Tssr33038 3 36599411 to 36599440 29 - TSS region transcription start site region 33038
Cpgi13088 3 36613096 to 36613650 554 CpG island CpG island 13088
Tssr33039 3 36613339 to 36613367 28 - TSS region transcription start site region 33039
Tssr33040 3 36613370 to 36613397 27 - TSS region transcription start site region 33040
Tssr33041 3 36613418 to 36613429 11 - TSS region transcription start site region 33041
Tssr33042 3 36613461 to 36613471 10 - TSS region transcription start site region 33042
Tssr28874 3 36613482 to 36613486 4 + TSS region transcription start site region 28874
Tssr33043 3 36613489 to 36613500 11 - TSS region transcription start site region 33043
Tssr28875 3 36616892 to 36616901 9 + TSS region transcription start site region 28875
Trpc3 3 36620482 to 36690167 69685 - protein coding gene transient receptor potential cation channel, subfamily C, member 3
Cpgi13089 3 36649963 to 36650276 313 CpG island CpG island 13089
Gm35856 3 36654065 to 36655011 946 - lncRNA gene predicted gene, 35856
Cpgi13090 3 36670845 to 36671735 890 CpG island CpG island 13090
Cpgi13091 3 36688933 to 36690589 1656 CpG island CpG island 13091
Tssr33044 3 36690118 to 36690172 54 - TSS region transcription start site region 33044
Gm12377 3 36694802 to 36695053 251 - pseudogene predicted gene 12377
D3Nds65 3 36709996 to 36710147 151 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 65
D3Nds64 3 36742861 to 36742997 136 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 64
Gm12376 3 36824352 to 36824958 606 - pseudogene predicted gene 12376
Tssr28876 3 36861995 to 36862011 16 + TSS region transcription start site region 28876
Tssr28877 3 36862014 to 36862040 26 + TSS region transcription start site region 28877
Cpgi13092 3 36862783 to 36863591 808 CpG island CpG island 13092
Tssr28878 3 36863102 to 36863147 45 + TSS region transcription start site region 28878
4932438A13Rik 3 36863104 to 37053033 189929 + protein coding gene RIKEN cDNA 4932438A13 gene
Tssr28879 3 36863148 to 36863164 16 + TSS region transcription start site region 28879
Tssr28880 3 36863166 to 36863177 11 + TSS region transcription start site region 28880
Tssr28881 3 36863179 to 36863190 11 + TSS region transcription start site region 28881