Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:35874426-36527275

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20595 3 35875646 to 35883349 7703 - pseudogene predicted gene, 20595
Dcun1d1 3 35892105 to 35937440 45335 - protein coding gene DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
Tssr33003 3 35925614 to 35925617 3 - TSS region transcription start site region 33003
Cpgi13077 3 35931990 to 35933732 1742 CpG island CpG island 13077
Tssr33004 3 35932512 to 35932532 20 - TSS region transcription start site region 33004
Tssr33005 3 35932570 to 35932596 26 - TSS region transcription start site region 33005
Tssr33006 3 35932836 to 35932854 18 - TSS region transcription start site region 33006
Tssr33007 3 35932858 to 35932904 46 - TSS region transcription start site region 33007
Tssr28856 3 35932883 to 35932915 32 + TSS region transcription start site region 28856
Gm15952 3 35933049 to 35955642 22593 + antisense lncRNA gene predicted gene 15952
Tssr33008 3 35933051 to 35933077 26 - TSS region transcription start site region 33008
Tssr33009 3 35933095 to 35933100 5 - TSS region transcription start site region 33009
Tssr33010 3 35933271 to 35933287 16 - TSS region transcription start site region 33010
Tssr860 3 35937386 to 35937390 4 - TSS region transcription start site region 860
Tssr33011 3 35937403 to 35937451 48 - TSS region transcription start site region 33011
Tssr861 3 35937474 to 35937479 5 - TSS region transcription start site region 861
Tssr28857 3 35937542 to 35937553 11 + TSS region transcription start site region 28857
8430422M14Rik 3 35955436 to 35956257 821 - unclassified gene RIKEN cDNA 8430422M14 gene
Mccc1 3 35959312 to 36000678 41366 - protein coding gene methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
Gm43080 3 35969384 to 35972026 2642 - unclassified gene predicted gene 43080
B230207O21Rik 3 35973771 to 35974091 320 + pseudogene RIKEN cDNA B230207O21 gene
Mccc1os 3 35999913 to 36008828 8915 + antisense lncRNA gene methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand
Cpgi13078 3 36000237 to 36000759 522 CpG island CpG island 13078
Tssr28858 3 36000417 to 36000440 23 + TSS region transcription start site region 28858
Tssr33012 3 36000564 to 36000608 44 - TSS region transcription start site region 33012
Tssr33013 3 36000617 to 36000647 30 - TSS region transcription start site region 33013
Tssr33014 3 36000650 to 36000660 10 - TSS region transcription start site region 33014
Tssr33015 3 36000662 to 36000682 20 - TSS region transcription start site region 33015
Ccdc144b 3 36007247 to 36053547 46300 - protein coding gene coiled-coil domain containing 144B
Tssr33016 3 36053491 to 36053501 10 - TSS region transcription start site region 33016
Tssr33017 3 36053504 to 36053510 6 - TSS region transcription start site region 33017
Tssr33018 3 36053512 to 36053531 19 - TSS region transcription start site region 33018
Cpgi13079 3 36065868 to 36066519 651 CpG island CpG island 13079
Acad9 3 36065984 to 36092857 26873 + protein coding gene acyl-Coenzyme A dehydrogenase family, member 9
Tssr28859 3 36065984 to 36066004 20 + TSS region transcription start site region 28859
Tssr28860 3 36066046 to 36066063 17 + TSS region transcription start site region 28860
Tssr28861 3 36066064 to 36066102 38 + TSS region transcription start site region 28861
Tssr28862 3 36066111 to 36066118 7 + TSS region transcription start site region 28862
Tssr28863 3 36075912 to 36075915 3 + TSS region transcription start site region 28863
Gm43079 3 36088859 to 36091446 2587 + antisense lncRNA gene predicted gene 43079
Gm43205 3 36097177 to 36099144 1967 + unclassified gene predicted gene 43205
Cpgi13080 3 36150935 to 36151746 811 CpG island CpG island 13080
Tssr28864 3 36151063 to 36151112 49 + TSS region transcription start site region 28864
Zfp267 3 36151080 to 36170341 19261 + protein coding gene zinc finger protein 267
Tssr28865 3 36151113 to 36151124 11 + TSS region transcription start site region 28865
Qrfpr 3 36179426 to 36222275 42849 - protein coding gene pyroglutamylated RFamide peptide receptor
Gm43255 3 36203289 to 36205623 2334 + antisense lncRNA gene predicted gene 43255
Tssr28866 3 36208122 to 36208167 45 + TSS region transcription start site region 28866
Gm18893 3 36213812 to 36214749 937 - pseudogene predicted gene, 18893
Cpgi13081 3 36221830 to 36222364 534 CpG island CpG island 13081
Tssr33019 3 36222278 to 36222294 16 - TSS region transcription start site region 33019
Tssr33020 3 36222302 to 36222318 16 - TSS region transcription start site region 33020
Cpgi13082 3 36222883 to 36223040 157 CpG island CpG island 13082
Gm42208 3 36272327 to 36274660 2333 - lincRNA gene predicted gene, 42208
Gm42209 3 36354218 to 36406508 52290 - lncRNA gene predicted gene, 42209
Gm17835 3 36394699 to 36395197 498 - pseudogene predicted gene, 17835
Tssr33021 3 36406377 to 36406388 11 - TSS region transcription start site region 33021
Gm17887 3 36421594 to 36422124 530 + pseudogene predicted gene, 17887
Anxa5 3 36448923 to 36475887 26964 - protein coding gene annexin A5
Tssr33022 3 36449346 to 36449363 17 - TSS region transcription start site region 33022
Tssr33023 3 36450661 to 36450705 44 - TSS region transcription start site region 33023
Tssr33024 3 36453497 to 36453537 40 - TSS region transcription start site region 33024
Tssr28867 3 36453511 to 36453542 31 + TSS region transcription start site region 28867
Tssr33025 3 36453539 to 36453593 54 - TSS region transcription start site region 33025
Tssr28868 3 36453882 to 36453941 59 + TSS region transcription start site region 28868
Tssr33026 3 36461971 to 36462001 30 - TSS region transcription start site region 33026
Tssr28869 3 36467762 to 36467773 11 + TSS region transcription start site region 28869
Tssr33027 3 36468920 to 36468948 28 - TSS region transcription start site region 33027
Tssr33028 3 36468952 to 36468965 13 - TSS region transcription start site region 33028
Tssr28870 3 36469240 to 36469248 8 + TSS region transcription start site region 28870
Tssr33029 3 36474526 to 36474530 4 - TSS region transcription start site region 33029
Cpgi13083 3 36475217 to 36476147 930 CpG island CpG island 13083
Mir7009 3 36475461 to 36475524 63 - miRNA gene microRNA 7009
Tssr33030 3 36475604 to 36475675 71 - TSS region transcription start site region 33030
Tssr33031 3 36475688 to 36475705 17 - TSS region transcription start site region 33031
Tssr28871 3 36475932 to 36475959 27 + TSS region transcription start site region 28871
1810062G17Rik 3 36475937 to 36482299 6362 + protein coding gene RIKEN cDNA 1810062G17 gene
Tssr28872 3 36475986 to 36476021 35 + TSS region transcription start site region 28872
Jobes1b 3 36480000 to 36850000 370000 QTL juvenile obesity 1b
Gm11548 3 36499804 to 36506809 7005 - lincRNA gene predicted gene 11548
Gm11549 3 36515057 to 36521445 6388 - lincRNA gene predicted gene 11549
Cpgi13084 3 36521107 to 36521922 815 CpG island CpG island 13084
Tssr33032 3 36521391 to 36521416 25 - TSS region transcription start site region 33032
Tssr33033 3 36521809 to 36521820 11 - TSS region transcription start site region 33033