Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:35862799-38262818

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272 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr28855 3 35863802 to 35863805 3 + TSS region transcription start site region 28855
Gm7741 3 35863877 to 35864865 988 + pseudogene predicted gene 7741
Gm20595 3 35875646 to 35883349 7703 - pseudogene predicted gene, 20595
Dcun1d1 3 35892105 to 35937440 45335 - protein coding gene DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
Tssr33003 3 35925614 to 35925617 3 - TSS region transcription start site region 33003
Cpgi13077 3 35931990 to 35933732 1742 CpG island CpG island 13077
Tssr33004 3 35932512 to 35932532 20 - TSS region transcription start site region 33004
Tssr33005 3 35932570 to 35932596 26 - TSS region transcription start site region 33005
Tssr33006 3 35932836 to 35932854 18 - TSS region transcription start site region 33006
Tssr33007 3 35932858 to 35932904 46 - TSS region transcription start site region 33007
Tssr28856 3 35932883 to 35932915 32 + TSS region transcription start site region 28856
Gm15952 3 35933049 to 35955642 22593 + antisense lncRNA gene predicted gene 15952
Tssr33008 3 35933051 to 35933077 26 - TSS region transcription start site region 33008
Tssr33009 3 35933095 to 35933100 5 - TSS region transcription start site region 33009
Tssr33010 3 35933271 to 35933287 16 - TSS region transcription start site region 33010
Tssr860 3 35937386 to 35937390 4 - TSS region transcription start site region 860
Tssr33011 3 35937403 to 35937451 48 - TSS region transcription start site region 33011
Tssr861 3 35937474 to 35937479 5 - TSS region transcription start site region 861
Tssr28857 3 35937542 to 35937553 11 + TSS region transcription start site region 28857
8430422M14Rik 3 35955436 to 35956257 821 - unclassified gene RIKEN cDNA 8430422M14 gene
Mccc1 3 35959312 to 36000678 41366 - protein coding gene methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
Gm43080 3 35969384 to 35972026 2642 - unclassified gene predicted gene 43080
B230207O21Rik 3 35973771 to 35974091 320 + pseudogene RIKEN cDNA B230207O21 gene
Mccc1os 3 35999913 to 36008828 8915 + antisense lncRNA gene methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand
Cpgi13078 3 36000237 to 36000759 522 CpG island CpG island 13078
Tssr28858 3 36000417 to 36000440 23 + TSS region transcription start site region 28858
Tssr33012 3 36000564 to 36000608 44 - TSS region transcription start site region 33012
Tssr33013 3 36000617 to 36000647 30 - TSS region transcription start site region 33013
Tssr33014 3 36000650 to 36000660 10 - TSS region transcription start site region 33014
Tssr33015 3 36000662 to 36000682 20 - TSS region transcription start site region 33015
Ccdc144b 3 36007247 to 36053547 46300 - protein coding gene coiled-coil domain containing 144B
Tssr33016 3 36053491 to 36053501 10 - TSS region transcription start site region 33016
Tssr33017 3 36053504 to 36053510 6 - TSS region transcription start site region 33017
Tssr33018 3 36053512 to 36053531 19 - TSS region transcription start site region 33018
Cpgi13079 3 36065868 to 36066519 651 CpG island CpG island 13079
Acad9 3 36065984 to 36092857 26873 + protein coding gene acyl-Coenzyme A dehydrogenase family, member 9
Tssr28859 3 36065984 to 36066004 20 + TSS region transcription start site region 28859
Tssr28860 3 36066046 to 36066063 17 + TSS region transcription start site region 28860
Tssr28861 3 36066064 to 36066102 38 + TSS region transcription start site region 28861
Tssr28862 3 36066111 to 36066118 7 + TSS region transcription start site region 28862
Tssr28863 3 36075912 to 36075915 3 + TSS region transcription start site region 28863
Gm43079 3 36088859 to 36091446 2587 + antisense lncRNA gene predicted gene 43079
Gm43205 3 36097177 to 36099144 1967 + unclassified gene predicted gene 43205
Cpgi13080 3 36150935 to 36151746 811 CpG island CpG island 13080
Tssr28864 3 36151063 to 36151112 49 + TSS region transcription start site region 28864
Zfp267 3 36151080 to 36170341 19261 + protein coding gene zinc finger protein 267
Tssr28865 3 36151113 to 36151124 11 + TSS region transcription start site region 28865
Qrfpr 3 36179426 to 36222275 42849 - protein coding gene pyroglutamylated RFamide peptide receptor
Gm43255 3 36203289 to 36205623 2334 + antisense lncRNA gene predicted gene 43255
Tssr28866 3 36208122 to 36208167 45 + TSS region transcription start site region 28866
Gm18893 3 36213812 to 36214749 937 - pseudogene predicted gene, 18893
Cpgi13081 3 36221830 to 36222364 534 CpG island CpG island 13081
Tssr33019 3 36222278 to 36222294 16 - TSS region transcription start site region 33019
Tssr33020 3 36222302 to 36222318 16 - TSS region transcription start site region 33020
Cpgi13082 3 36222883 to 36223040 157 CpG island CpG island 13082
Gm42208 3 36272327 to 36274660 2333 - lincRNA gene predicted gene, 42208
Gm42209 3 36354218 to 36406508 52290 - lncRNA gene predicted gene, 42209
Gm17835 3 36394699 to 36395197 498 - pseudogene predicted gene, 17835
Tssr33021 3 36406377 to 36406388 11 - TSS region transcription start site region 33021
Gm17887 3 36421594 to 36422124 530 + pseudogene predicted gene, 17887
Anxa5 3 36448923 to 36475887 26964 - protein coding gene annexin A5
Tssr33022 3 36449346 to 36449363 17 - TSS region transcription start site region 33022
Tssr33023 3 36450661 to 36450705 44 - TSS region transcription start site region 33023
Tssr33024 3 36453497 to 36453537 40 - TSS region transcription start site region 33024
Tssr28867 3 36453511 to 36453542 31 + TSS region transcription start site region 28867
Tssr33025 3 36453539 to 36453593 54 - TSS region transcription start site region 33025
Tssr28868 3 36453882 to 36453941 59 + TSS region transcription start site region 28868
Tssr33026 3 36461971 to 36462001 30 - TSS region transcription start site region 33026
Tssr28869 3 36467762 to 36467773 11 + TSS region transcription start site region 28869
Tssr33027 3 36468920 to 36468948 28 - TSS region transcription start site region 33027
Tssr33028 3 36468952 to 36468965 13 - TSS region transcription start site region 33028
Tssr28870 3 36469240 to 36469248 8 + TSS region transcription start site region 28870
Tssr33029 3 36474526 to 36474530 4 - TSS region transcription start site region 33029
Cpgi13083 3 36475217 to 36476147 930 CpG island CpG island 13083
Mir7009 3 36475461 to 36475524 63 - miRNA gene microRNA 7009
Tssr33030 3 36475604 to 36475675 71 - TSS region transcription start site region 33030
Tssr33031 3 36475688 to 36475705 17 - TSS region transcription start site region 33031
Tssr28871 3 36475932 to 36475959 27 + TSS region transcription start site region 28871
1810062G17Rik 3 36475937 to 36482299 6362 + protein coding gene RIKEN cDNA 1810062G17 gene
Tssr28872 3 36475986 to 36476021 35 + TSS region transcription start site region 28872
Jobes1b 3 36480000 to 36850000 370000 QTL juvenile obesity 1b
Gm11548 3 36499804 to 36506809 7005 - lincRNA gene predicted gene 11548
Gm11549 3 36515057 to 36521445 6388 - lincRNA gene predicted gene 11549
Cpgi13084 3 36521107 to 36521922 815 CpG island CpG island 13084
Tssr33032 3 36521391 to 36521416 25 - TSS region transcription start site region 33032
Tssr33033 3 36521809 to 36521820 11 - TSS region transcription start site region 33033
Gm43537 3 36529222 to 36532331 3109 - unclassified gene predicted gene 43537
Cpgi13085 3 36532180 to 36532348 168 CpG island CpG island 13085
Gm11550 3 36539383 to 36540081 698 - pseudogene predicted gene 11550
Cpgi13086 3 36552394 to 36552975 581 CpG island CpG island 13086
Tssr28873 3 36552600 to 36552677 77 + TSS region transcription start site region 28873
Exosc9 3 36552606 to 36565727 13121 + protein coding gene exosome component 9
Ccna2 3 36564865 to 36572150 7285 - protein coding gene cyclin A2
Tssr33034 3 36565310 to 36565315 5 - TSS region transcription start site region 33034
D3Nds36 3 36565461 to 36565672 211 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 36
Tssr33035 3 36567904 to 36567928 24 - TSS region transcription start site region 33035
Cpgi13087 3 36571263 to 36572429 1166 CpG island CpG island 13087
Tssr33036 3 36571918 to 36571931 13 - TSS region transcription start site region 33036
Tssr33037 3 36571952 to 36572003 51 - TSS region transcription start site region 33037
Bbs7 3 36573142 to 36613477 40335 - protein coding gene Bardet-Biedl syndrome 7 (human)
Tssr33038 3 36599411 to 36599440 29 - TSS region transcription start site region 33038
Cpgi13088 3 36613096 to 36613650 554 CpG island CpG island 13088
Tssr33039 3 36613339 to 36613367 28 - TSS region transcription start site region 33039
Tssr33040 3 36613370 to 36613397 27 - TSS region transcription start site region 33040
Tssr33041 3 36613418 to 36613429 11 - TSS region transcription start site region 33041
Tssr33042 3 36613461 to 36613471 10 - TSS region transcription start site region 33042
Tssr28874 3 36613482 to 36613486 4 + TSS region transcription start site region 28874
Tssr33043 3 36613489 to 36613500 11 - TSS region transcription start site region 33043
Tssr28875 3 36616892 to 36616901 9 + TSS region transcription start site region 28875
Trpc3 3 36620482 to 36690167 69685 - protein coding gene transient receptor potential cation channel, subfamily C, member 3
Cpgi13089 3 36649963 to 36650276 313 CpG island CpG island 13089
Gm35856 3 36654065 to 36655011 946 - lncRNA gene predicted gene, 35856
Cpgi13090 3 36670845 to 36671735 890 CpG island CpG island 13090
Cpgi13091 3 36688933 to 36690589 1656 CpG island CpG island 13091
Tssr33044 3 36690118 to 36690172 54 - TSS region transcription start site region 33044
Gm12377 3 36694802 to 36695053 251 - pseudogene predicted gene 12377
D3Nds65 3 36709996 to 36710147 151 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 65
D3Nds64 3 36742861 to 36742997 136 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 64
Gm12376 3 36824352 to 36824958 606 - pseudogene predicted gene 12376
Tssr28876 3 36861995 to 36862011 16 + TSS region transcription start site region 28876
Tssr28877 3 36862014 to 36862040 26 + TSS region transcription start site region 28877
Cpgi13092 3 36862783 to 36863591 808 CpG island CpG island 13092
Tssr28878 3 36863102 to 36863147 45 + TSS region transcription start site region 28878
4932438A13Rik 3 36863104 to 37053033 189929 + protein coding gene RIKEN cDNA 4932438A13 gene
Tssr28879 3 36863148 to 36863164 16 + TSS region transcription start site region 28879
Tssr28880 3 36863166 to 36863177 11 + TSS region transcription start site region 28880
Tssr28881 3 36863179 to 36863190 11 + TSS region transcription start site region 28881
Tssr28882 3 36942381 to 36942411 30 + TSS region transcription start site region 28882
Tssr28883 3 37044238 to 37044244 6 + TSS region transcription start site region 28883
D3Nds47 3 37045899 to 37046065 166 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 47
Gm12531 3 37052215 to 37060035 7820 - antisense lncRNA gene predicted gene 12531
D3Nds50 3 37058589 to 37058639 50 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 50
Tssr28884 3 37062799 to 37062818 19 + TSS region transcription start site region 28884
Tssr28885 3 37063042 to 37063049 7 + TSS region transcription start site region 28885
Cpgi13093 3 37063148 to 37063905 757 CpG island CpG island 13093
Adad1 3 37063527 to 37121930 58403 + protein coding gene adenosine deaminase domain containing 1 (testis specific)
Tssr28886 3 37063612 to 37063616 4 + TSS region transcription start site region 28886
Tssr28887 3 37063631 to 37063639 8 + TSS region transcription start site region 28887
Tssr28888 3 37063644 to 37063672 28 + TSS region transcription start site region 28888
Tssr28889 3 37063674 to 37063697 23 + TSS region transcription start site region 28889
Tssr28890 3 37063698 to 37063700 2 + TSS region transcription start site region 28890
Tssr28891 3 37063704 to 37063715 11 + TSS region transcription start site region 28891
Gm12582 3 37077655 to 37078351 696 + pseudogene predicted gene 12582
Gm12583 3 37108174 to 37109026 852 + pseudogene predicted gene 12583
Gm12584 3 37116734 to 37117838 1104 + pseudogene predicted gene 12584
D3Nds6 3 37120077 to 37120217 140 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 6
Il2 3 37120713 to 37125954 5241 - protein coding gene interleukin 2
Ssial2 3 37120713 to 37125954 5241 QTL susceptibility to sialadenitis 2
D3Mit21 3 37125593 to 37125823 230 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 21
Aod2 3 37125593 to 68809613 31684020 QTL autoimmune ovarian dysgenesis 2
D3Nds27 3 37125736 to 37125864 128 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 27
Tssr33045 3 37125773 to 37125848 75 - TSS region transcription start site region 33045
Tssr33046 3 37125871 to 37125882 11 - TSS region transcription start site region 33046
Tssr33047 3 37125901 to 37125906 5 - TSS region transcription start site region 33047
Tssr33048 3 37125943 to 37125969 26 - TSS region transcription start site region 33048
Gm36000 3 37169725 to 37176647 6922 - lncRNA gene predicted gene, 36000
Tssr33049 3 37174672 to 37174680 8 - TSS region transcription start site region 33049
Gm12532 3 37182885 to 37188593 5708 + lincRNA gene predicted gene 12532
Il21 3 37222759 to 37232636 9877 - protein coding gene interleukin 21
Gm36168 3 37225376 to 37227110 1734 + lncRNA gene predicted gene, 36168
Gm12534 3 37231333 to 37232469 1136 + antisense lncRNA gene predicted gene 12534
Tssr28892 3 37231484 to 37231495 11 + TSS region transcription start site region 28892
Tssr33050 3 37232633 to 37232637 4 - TSS region transcription start site region 33050
Gm43822 3 37232867 to 37233342 475 + unclassified gene predicted gene 43822
Gm24169 3 37256784 to 37256893 109 - miRNA gene predicted gene, 24169
Cpgi13094 3 37257786 to 37257976 190 CpG island CpG island 13094
Tssr28893 3 37281505 to 37281515 10 + TSS region transcription start site region 28893
D3Nds56 3 37295914 to 37296066 152 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 56
Cetn4 3 37308627 to 37312446 3819 - protein coding gene centrin 4
Cpgi13095 3 37312020 to 37312914 894 CpG island CpG island 13095
Tssr33051 3 37312418 to 37312465 47 - TSS region transcription start site region 33051
Tssr28894 3 37312514 to 37312575 61 + TSS region transcription start site region 28894
Gm43439 3 37312519 to 37404866 92347 + unclassified non-coding RNA gene predicted gene 43439
Bbs12 3 37312554 to 37321453 8899 + protein coding gene Bardet-Biedl syndrome 12 (human)
Gm12540 3 37327072 to 37327390 318 + pseudogene predicted gene 12540
Fgf2os 3 37335332 to 37349740 14408 - antisense lncRNA gene fibroblast growth factor 2, opposite strand
Gm43488 3 37339017 to 37341520 2503 + unclassified gene predicted gene 43488
Cpgi13096 3 37348209 to 37349431 1222 CpG island CpG island 13096
Fgf2 3 37348477 to 37404893 56416 + protein coding gene fibroblast growth factor 2
Tssr28895 3 37348485 to 37348493 8 + TSS region transcription start site region 28895
Tssr28896 3 37348645 to 37348716 71 + TSS region transcription start site region 28896
D3Nds51 3 37349659 to 37349933 274 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 51
Tssr28897 3 37365451 to 37365452 1 + TSS region transcription start site region 28897
Tssr28898 3 37366881 to 37366895 14 + TSS region transcription start site region 28898
D3Nds34 3 37373320 to 37373516 196 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 34
Gm42923 3 37392206 to 37395101 2895 - unclassified gene predicted gene 42923
Nudt6 3 37404982 to 37420186 15204 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 6
Cpgi13097 3 37418975 to 37421080 2105 CpG island CpG island 13097
Tssr33052 3 37419573 to 37419605 32 - TSS region transcription start site region 33052
Spata5 3 37419950 to 37579096 159146 + protein coding gene spermatogenesis associated 5
Tssr28899 3 37420257 to 37420272 15 + TSS region transcription start site region 28899
Tssr28900 3 37420273 to 37420335 62 + TSS region transcription start site region 28900
Tssr28901 3 37420341 to 37420356 15 + TSS region transcription start site region 28901
Tssr28902 3 37420398 to 37420407 9 + TSS region transcription start site region 28902
D3Nds46 3 37472213 to 37472329 116 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 46
Tssr28903 3 37481353 to 37481372 19 + TSS region transcription start site region 28903
Tssr28904 3 37481416 to 37481440 24 + TSS region transcription start site region 28904
Cpgi13098 3 37481419 to 37481575 156 CpG island CpG island 13098
Tssr28905 3 37481470 to 37481493 23 + TSS region transcription start site region 28905
Tssr28906 3 37481559 to 37481570 11 + TSS region transcription start site region 28906