Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:34833833-35994000

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm21388 3 34826669 to 34879283 52614 + lincRNA gene predicted gene, 21388
Tssr32990 3 34861249 to 34861262 13 - TSS region transcription start site region 32990
D3Mit223 3 34913882 to 34914025 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 223
Mir6378 3 34922545 to 34922651 106 - miRNA gene microRNA 6378
Gm35255 3 34950227 to 34959531 9304 + lncRNA gene predicted gene, 35255
D3Mit331 3 34960436 to 34960547 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 331
Tssr28842 3 35113475 to 35113483 8 + TSS region transcription start site region 28842
Tssr28843 3 35113503 to 35113517 14 + TSS region transcription start site region 28843
Tgq13 3 35234019 to 35234019 0 QTL triglyceride QTL 13
1700017M07Rik 3 35256462 to 35276131 19669 - lincRNA gene RIKEN cDNA 1700017M07 gene
Gm35425 3 35318437 to 35330114 11677 + lncRNA gene predicted gene, 35425
Gm25442 3 35325614 to 35325705 91 + miRNA gene predicted gene, 25442
Gm38512 3 35337700 to 35405950 68250 - lncRNA gene predicted gene, 38512
Gm43078 3 35413833 to 35414000 167 + unclassified gene predicted gene 43078
Gm7733 3 35536882 to 35537701 819 - pseudogene predicted gene 7733
Tssr28844 3 35545880 to 35545883 3 + TSS region transcription start site region 28844
Ube2l3-ps1 3 35545894 to 35546329 435 + pseudogene ubiquitin-conjugating enzyme E2L 3, pseudogene 1
Gm6639 3 35597152 to 35666163 69011 - lincRNA gene predicted gene 6639
Tssr32991 3 35662288 to 35662299 11 - TSS region transcription start site region 32991
Tssr32992 3 35662320 to 35662325 5 - TSS region transcription start site region 32992
Tssr32993 3 35666159 to 35666173 14 - TSS region transcription start site region 32993
Tssr32994 3 35666193 to 35666201 8 - TSS region transcription start site region 32994
Tssr32995 3 35719649 to 35719659 10 - TSS region transcription start site region 32995
Tssr28845 3 35721257 to 35721266 9 + TSS region transcription start site region 28845
Tssr28846 3 35722085 to 35722096 11 + TSS region transcription start site region 28846
Tssr32996 3 35722934 to 35722945 11 - TSS region transcription start site region 32996
Tssr28847 3 35723055 to 35723078 23 + TSS region transcription start site region 28847
Gm25696 3 35735373 to 35735477 104 + snRNA gene predicted gene, 25696
Cpgi13076 3 35753796 to 35754903 1107 CpG island CpG island 13076
Tssr28848 3 35754089 to 35754114 25 + TSS region transcription start site region 28848
Atp11b 3 35754106 to 35856276 102170 + protein coding gene ATPase, class VI, type 11B
Tssr28849 3 35754121 to 35754135 14 + TSS region transcription start site region 28849
Tssr28850 3 35754155 to 35754166 11 + TSS region transcription start site region 28850
Tssr32997 3 35754410 to 35754421 11 - TSS region transcription start site region 32997
Tssr32998 3 35754430 to 35754457 27 - TSS region transcription start site region 32998
Tssr32999 3 35754474 to 35754483 9 - TSS region transcription start site region 32999
Tssr33000 3 35754509 to 35754516 7 - TSS region transcription start site region 33000
Tssr33001 3 35754639 to 35754641 2 - TSS region transcription start site region 33001
Tssr33002 3 35754733 to 35754749 16 - TSS region transcription start site region 33002
Tssr28851 3 35762273 to 35762323 50 + TSS region transcription start site region 28851
Tssr28852 3 35783022 to 35783060 38 + TSS region transcription start site region 28852
Tssr28853 3 35822581 to 35822585 4 + TSS region transcription start site region 28853
Gm43203 3 35845342 to 35845899 557 + unclassified gene predicted gene 43203
D3Mit239 3 35847656 to 35847856 200 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 239
Tssr28854 3 35855835 to 35855844 9 + TSS region transcription start site region 28854
1110021P09Rik 3 35861622 to 35862120 498 unclassified gene RIKEN cDNA 1110021P09 gene
Tssr28855 3 35863802 to 35863805 3 + TSS region transcription start site region 28855
Gm7741 3 35863877 to 35864865 988 + pseudogene predicted gene 7741
Gm20595 3 35875646 to 35883349 7703 - pseudogene predicted gene, 20595
Dcun1d1 3 35892105 to 35937440 45335 - protein coding gene DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
Tssr33003 3 35925614 to 35925617 3 - TSS region transcription start site region 33003
Cpgi13077 3 35931990 to 35933732 1742 CpG island CpG island 13077
Tssr33004 3 35932512 to 35932532 20 - TSS region transcription start site region 33004
Tssr33005 3 35932570 to 35932596 26 - TSS region transcription start site region 33005
Tssr33006 3 35932836 to 35932854 18 - TSS region transcription start site region 33006
Tssr33007 3 35932858 to 35932904 46 - TSS region transcription start site region 33007
Tssr28856 3 35932883 to 35932915 32 + TSS region transcription start site region 28856
Gm15952 3 35933049 to 35955642 22593 + antisense lncRNA gene predicted gene 15952
Tssr33008 3 35933051 to 35933077 26 - TSS region transcription start site region 33008
Tssr33009 3 35933095 to 35933100 5 - TSS region transcription start site region 33009
Tssr33010 3 35933271 to 35933287 16 - TSS region transcription start site region 33010
Tssr860 3 35937386 to 35937390 4 - TSS region transcription start site region 860
Tssr33011 3 35937403 to 35937451 48 - TSS region transcription start site region 33011
Tssr861 3 35937474 to 35937479 5 - TSS region transcription start site region 861
Tssr28857 3 35937542 to 35937553 11 + TSS region transcription start site region 28857
8430422M14Rik 3 35955436 to 35956257 821 - unclassified gene RIKEN cDNA 8430422M14 gene
Mccc1 3 35959312 to 36000678 41366 - protein coding gene methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
Gm43080 3 35969384 to 35972026 2642 - unclassified gene predicted gene 43080
B230207O21Rik 3 35973771 to 35974091 320 + pseudogene RIKEN cDNA B230207O21 gene