Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:34663882-35164025

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sox2ot 3 34560381 to 34677993 117612 + lncRNA gene SOX2 overlapping transcript (non-protein coding)
Cpgi13074 3 34662821 to 34664739 1918 CpG island CpG island 13074
Gm42693 3 34663659 to 34664289 630 - unclassified gene predicted gene 42693
Gm43206 3 34682633 to 34682746 113 + unclassified gene predicted gene 43206
Tssr28829 3 34684316 to 34684320 4 + TSS region transcription start site region 28829
Gm34941 3 34689378 to 34692921 3543 + lncRNA gene predicted gene, 34941
Cpgi13075 3 34692205 to 34692641 436 CpG island CpG island 13075
Tssr32983 3 34699450 to 34699456 6 - TSS region transcription start site region 32983
Gm3143 3 34699640 to 34716662 17022 - lincRNA gene predicted gene 3143
Tssr28830 3 34699945 to 34699947 2 + TSS region transcription start site region 28830
D3Nds55 3 34735381 to 34735538 157 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 55
Tssr28831 3 34757443 to 34757456 13 + TSS region transcription start site region 28831
Tssr32984 3 34757853 to 34757860 7 - TSS region transcription start site region 32984
Tssr32985 3 34757893 to 34757926 33 - TSS region transcription start site region 32985
Tssr32986 3 34757941 to 34757948 7 - TSS region transcription start site region 32986
Tssr32987 3 34757954 to 34757965 11 - TSS region transcription start site region 32987
Tssr28832 3 34758374 to 34758380 6 + TSS region transcription start site region 28832
Tssr28833 3 34760466 to 34760486 20 + TSS region transcription start site region 28833
Tssr32988 3 34761195 to 34761243 48 - TSS region transcription start site region 32988
Tssr32989 3 34761416 to 34761431 15 - TSS region transcription start site region 32989
Tssr28834 3 34764143 to 34764152 9 + TSS region transcription start site region 28834
Tssr28835 3 34764155 to 34764186 31 + TSS region transcription start site region 28835
Tssr28836 3 34764188 to 34764198 10 + TSS region transcription start site region 28836
Tssr28837 3 34764883 to 34764892 9 + TSS region transcription start site region 28837
Gm38509 3 34772075 to 34782346 10271 + lincRNA gene predicted gene, 38509
Tssr28838 3 34784126 to 34784131 5 + TSS region transcription start site region 28838
Tssr28839 3 34826605 to 34826646 41 + TSS region transcription start site region 28839
Tssr28840 3 34826651 to 34826658 7 + TSS region transcription start site region 28840
Tssr28841 3 34826666 to 34826671 5 + TSS region transcription start site region 28841
Gm21388 3 34826669 to 34879283 52614 + lincRNA gene predicted gene, 21388
Tssr32990 3 34861249 to 34861262 13 - TSS region transcription start site region 32990
D3Mit223 3 34913882 to 34914025 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 223
Mir6378 3 34922545 to 34922651 106 - miRNA gene microRNA 6378
Gm35255 3 34950227 to 34959531 9304 + lncRNA gene predicted gene, 35255
D3Mit331 3 34960436 to 34960547 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 331
Tssr28842 3 35113475 to 35113483 8 + TSS region transcription start site region 28842
Tssr28843 3 35113503 to 35113517 14 + TSS region transcription start site region 28843