Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:34600405-34702461

43 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Sox2ot	3	34560381 to 34677993	117612	+	lncRNA gene	SOX2 overlapping transcript (non-protein coding)
Gm42205	3	34598519 to 34602248	3729	-	lincRNA gene	predicted gene, 42205
Tssr32974	3	34620378 to 34620381	3	-	TSS region	transcription start site region 32974
Cpgi13069	3	34634625 to 34634893	268		CpG island	CpG island 13069
Tssr28816	3	34638216 to 34638228	12	+	TSS region	transcription start site region 28816
Tssr28817	3	34638321 to 34638342	21	+	TSS region	transcription start site region 28817
Tssr28818	3	34638344 to 34638371	27	+	TSS region	transcription start site region 28818
Mir1897	3	34638464 to 34638542	78	+	miRNA gene	microRNA 1897
Tssr28819	3	34640220 to 34640225	5	+	TSS region	transcription start site region 28819
D3Mit168	3	34640701 to 34640804	103		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 168
Cpgi13070	3	34640778 to 34640938	160		CpG island	CpG island 13070
Cpgi13071	3	34641993 to 34642832	839		CpG island	CpG island 13071
Tssr28820	3	34643115 to 34643120	5	+	TSS region	transcription start site region 28820
Gm42692	3	34643264 to 34646096	2832	+	unclassified gene	predicted gene 42692
Tssr32975	3	34648485 to 34648489	4	-	TSS region	transcription start site region 32975
Cpgi13072	3	34648719 to 34651529	2810		CpG island	CpG island 13072
Tssr32976	3	34648952 to 34648963	11	-	TSS region	transcription start site region 32976
Tssr32977	3	34649724 to 34649735	11	-	TSS region	transcription start site region 32977
Tssr32978	3	34649756 to 34649769	13	-	TSS region	transcription start site region 32978
Tssr32979	3	34649847 to 34649875	28	-	TSS region	transcription start site region 32979
Tssr28821	3	34649923 to 34649934	11	+	TSS region	transcription start site region 28821
Tssr28822	3	34649987 to 34650005	18	+	TSS region	transcription start site region 28822
Tssr28823	3	34650024 to 34650050	26	+	TSS region	transcription start site region 28823
Tssr28824	3	34650174 to 34650189	15	+	TSS region	transcription start site region 28824
Tssr28825	3	34650222 to 34650233	11	+	TSS region	transcription start site region 28825
Sox2	3	34650405 to 34652461	2056	+	protein coding gene	SRY (sex determining region Y)-box 2
Tssr32980	3	34650714 to 34650720	6	-	TSS region	transcription start site region 32980
Tssr28826	3	34650766 to 34650780	14	+	TSS region	transcription start site region 28826
Tssr32981	3	34651036 to 34651047	11	-	TSS region	transcription start site region 32981
Tssr28827	3	34651071 to 34651082	11	+	TSS region	transcription start site region 28827
Gm27611	3	34653178 to 34653285	107	+	unclassified non-coding RNA gene	predicted gene, 27611
Tssr28828	3	34653586 to 34653593	7	+	TSS region	transcription start site region 28828
Tssr32982	3	34653989 to 34654008	19	-	TSS region	transcription start site region 32982
Cpgi13073	3	34661575 to 34661869	294		CpG island	CpG island 13073
Cpgi13074	3	34662821 to 34664739	1918		CpG island	CpG island 13074
Gm42693	3	34663659 to 34664289	630	-	unclassified gene	predicted gene 42693
Gm43206	3	34682633 to 34682746	113	+	unclassified gene	predicted gene 43206
Tssr28829	3	34684316 to 34684320	4	+	TSS region	transcription start site region 28829
Gm34941	3	34689378 to 34692921	3543	+	lncRNA gene	predicted gene, 34941
Cpgi13075	3	34692205 to 34692641	436		CpG island	CpG island 13075
Tssr32983	3	34699450 to 34699456	6	-	TSS region	transcription start site region 32983
Gm3143	3	34699640 to 34716662	17022	-	lincRNA gene	predicted gene 3143
Tssr28830	3	34699945 to 34699947	2	+	TSS region	transcription start site region 28830