Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:34220027-34960031

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38505 3 34298172 to 34351712 53540 - lincRNA gene predicted gene, 38505
Tssr32972 3 34351674 to 34351682 8 - TSS region transcription start site region 32972
Tssr32973 3 34351685 to 34351703 18 - TSS region transcription start site region 32973
Tssr859 3 34408108 to 34408112 4 + TSS region transcription start site region 859
Gm34599 3 34416495 to 34418162 1667 + lincRNA gene predicted gene, 34599
Gm20515 3 34427373 to 34435097 7724 - lincRNA gene predicted gene 20515
Cpgi13068 3 34454098 to 34454596 498 CpG island CpG island 13068
Tssr28806 3 34454381 to 34454399 18 + TSS region transcription start site region 28806
Gm29135 3 34481428 to 34482207 779 - lincRNA gene predicted gene 29135
D3Mit180.2 3 34506577 to 34506746 169 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 180.2
D3Mit180 3 34506728 to 34506853 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 180
Tssr28807 3 34560194 to 34560203 9 + TSS region transcription start site region 28807
Tssr28808 3 34560212 to 34560224 12 + TSS region transcription start site region 28808
Gm27403 3 34560340 to 34560553 213 + unclassified non-coding RNA gene predicted gene, 27403
Tssr28809 3 34560344 to 34560350 6 + TSS region transcription start site region 28809
Tssr28810 3 34560360 to 34560386 26 + TSS region transcription start site region 28810
Sox2ot 3 34560381 to 34677993 117612 + lncRNA gene SOX2 overlapping transcript (non-protein coding)
Tssr28811 3 34560626 to 34560646 20 + TSS region transcription start site region 28811
Tssr28812 3 34561227 to 34561233 6 + TSS region transcription start site region 28812
Gm42695 3 34565265 to 34572202 6937 - lincRNA gene predicted gene 42695
Tssr28813 3 34589917 to 34589954 37 + TSS region transcription start site region 28813
Tssr28814 3 34590027 to 34590031 4 + TSS region transcription start site region 28814
Gm42205 3 34598519 to 34602248 3729 - lincRNA gene predicted gene, 42205
Tssr28815 3 34599809 to 34599816 7 + TSS region transcription start site region 28815
Tssr32974 3 34620378 to 34620381 3 - TSS region transcription start site region 32974
Cpgi13069 3 34634625 to 34634893 268 CpG island CpG island 13069
Tssr28816 3 34638216 to 34638228 12 + TSS region transcription start site region 28816
Tssr28817 3 34638321 to 34638342 21 + TSS region transcription start site region 28817
Tssr28818 3 34638344 to 34638371 27 + TSS region transcription start site region 28818
Mir1897 3 34638464 to 34638542 78 + miRNA gene microRNA 1897
Tssr28819 3 34640220 to 34640225 5 + TSS region transcription start site region 28819
D3Mit168 3 34640701 to 34640804 103 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 168
Cpgi13070 3 34640778 to 34640938 160 CpG island CpG island 13070
Cpgi13071 3 34641993 to 34642832 839 CpG island CpG island 13071
Tssr28820 3 34643115 to 34643120 5 + TSS region transcription start site region 28820
Gm42692 3 34643264 to 34646096 2832 + unclassified gene predicted gene 42692
Tssr32975 3 34648485 to 34648489 4 - TSS region transcription start site region 32975
Cpgi13072 3 34648719 to 34651529 2810 CpG island CpG island 13072
Tssr32976 3 34648952 to 34648963 11 - TSS region transcription start site region 32976
Tssr32977 3 34649724 to 34649735 11 - TSS region transcription start site region 32977
Tssr32978 3 34649756 to 34649769 13 - TSS region transcription start site region 32978
Tssr32979 3 34649847 to 34649875 28 - TSS region transcription start site region 32979
Tssr28821 3 34649923 to 34649934 11 + TSS region transcription start site region 28821
Tssr28822 3 34649987 to 34650005 18 + TSS region transcription start site region 28822
Tssr28823 3 34650024 to 34650050 26 + TSS region transcription start site region 28823
Tssr28824 3 34650174 to 34650189 15 + TSS region transcription start site region 28824
Tssr28825 3 34650222 to 34650233 11 + TSS region transcription start site region 28825
Sox2 3 34650405 to 34652461 2056 + protein coding gene SRY (sex determining region Y)-box 2
Tssr32980 3 34650714 to 34650720 6 - TSS region transcription start site region 32980
Tssr28826 3 34650766 to 34650780 14 + TSS region transcription start site region 28826
Tssr32981 3 34651036 to 34651047 11 - TSS region transcription start site region 32981
Tssr28827 3 34651071 to 34651082 11 + TSS region transcription start site region 28827
Gm27611 3 34653178 to 34653285 107 + unclassified non-coding RNA gene predicted gene, 27611
Tssr28828 3 34653586 to 34653593 7 + TSS region transcription start site region 28828
Tssr32982 3 34653989 to 34654008 19 - TSS region transcription start site region 32982
Cpgi13073 3 34661575 to 34661869 294 CpG island CpG island 13073
Cpgi13074 3 34662821 to 34664739 1918 CpG island CpG island 13074
Gm42693 3 34663659 to 34664289 630 - unclassified gene predicted gene 42693
Gm43206 3 34682633 to 34682746 113 + unclassified gene predicted gene 43206
Tssr28829 3 34684316 to 34684320 4 + TSS region transcription start site region 28829
Gm34941 3 34689378 to 34692921 3543 + lncRNA gene predicted gene, 34941
Cpgi13075 3 34692205 to 34692641 436 CpG island CpG island 13075
Tssr32983 3 34699450 to 34699456 6 - TSS region transcription start site region 32983
Gm3143 3 34699640 to 34716662 17022 - lincRNA gene predicted gene 3143
Tssr28830 3 34699945 to 34699947 2 + TSS region transcription start site region 28830
D3Nds55 3 34735381 to 34735538 157 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 55
Tssr28831 3 34757443 to 34757456 13 + TSS region transcription start site region 28831
Tssr32984 3 34757853 to 34757860 7 - TSS region transcription start site region 32984
Tssr32985 3 34757893 to 34757926 33 - TSS region transcription start site region 32985
Tssr32986 3 34757941 to 34757948 7 - TSS region transcription start site region 32986
Tssr32987 3 34757954 to 34757965 11 - TSS region transcription start site region 32987
Tssr28832 3 34758374 to 34758380 6 + TSS region transcription start site region 28832
Tssr28833 3 34760466 to 34760486 20 + TSS region transcription start site region 28833
Tssr32988 3 34761195 to 34761243 48 - TSS region transcription start site region 32988
Tssr32989 3 34761416 to 34761431 15 - TSS region transcription start site region 32989
Tssr28834 3 34764143 to 34764152 9 + TSS region transcription start site region 28834
Tssr28835 3 34764155 to 34764186 31 + TSS region transcription start site region 28835
Tssr28836 3 34764188 to 34764198 10 + TSS region transcription start site region 28836
Tssr28837 3 34764883 to 34764892 9 + TSS region transcription start site region 28837
Gm38509 3 34772075 to 34782346 10271 + lincRNA gene predicted gene, 38509
Tssr28838 3 34784126 to 34784131 5 + TSS region transcription start site region 28838
Tssr28839 3 34826605 to 34826646 41 + TSS region transcription start site region 28839
Tssr28840 3 34826651 to 34826658 7 + TSS region transcription start site region 28840
Tssr28841 3 34826666 to 34826671 5 + TSS region transcription start site region 28841
Gm21388 3 34826669 to 34879283 52614 + lincRNA gene predicted gene, 21388
Tssr32990 3 34861249 to 34861262 13 - TSS region transcription start site region 32990
D3Mit223 3 34913882 to 34914025 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 223
Mir6378 3 34922545 to 34922651 106 - miRNA gene microRNA 6378
Gm35255 3 34950227 to 34959531 9304 + lncRNA gene predicted gene, 35255