Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:33627954-35887965

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42694 3 33684508 to 33684865 357 - pseudogene predicted gene 42694
Gm42203 3 33686964 to 33692001 5037 - lncRNA gene predicted gene, 42203
Gm43666 3 33703355 to 33759616 56261 - lincRNA gene predicted gene 43666
Tssr858 3 33720115 to 33720120 5 + TSS region transcription start site region 858
Gm18611 3 33730667 to 33731350 683 + pseudogene predicted gene, 18611
Del(3)3Lt 3 33746227 to 33750515 4288 cytogenetic marker deletion, Chr 3, Edward H Leiter 3
Cpgi13065 3 33799573 to 33800756 1183 CpG island CpG island 13065
Tssr28781 3 33799791 to 33799809 18 + TSS region transcription start site region 28781
Ttc14 3 33800022 to 33814860 14838 + protein coding gene tetratricopeptide repeat domain 14
Tssr28782 3 33800144 to 33800153 9 + TSS region transcription start site region 28782
Tssr28783 3 33800158 to 33800234 76 + TSS region transcription start site region 28783
Tssr32962 3 33801683 to 33801694 11 - TSS region transcription start site region 32962
Tssr28784 3 33807274 to 33807286 12 + TSS region transcription start site region 28784
Ccdc39 3 33812362 to 33844310 31948 - protein coding gene coiled-coil domain containing 39
Tssr32963 3 33812733 to 33812736 3 - TSS region transcription start site region 32963
Gm43140 3 33817256 to 33817946 690 + antisense lncRNA gene predicted gene 43140
Tssr32964 3 33844212 to 33844248 36 - TSS region transcription start site region 32964
Tssr32965 3 33844255 to 33844313 58 - TSS region transcription start site region 32965
4930431L21Rik 3 33866813 to 33897584 30771 - lincRNA gene RIKEN cDNA 4930431L21 gene
Gm42204 3 33906845 to 33908227 1382 + lncRNA gene predicted gene, 42204
4930502C17Rik 3 33956200 to 33957147 947 + unclassified gene RIKEN cDNA 4930502C17 gene
Gm23175 3 33959069 to 33959200 131 - snoRNA gene predicted gene, 23175
Gm46833 3 33972181 to 33975453 3272 - lncRNA gene predicted gene, 46833
Tssr32966 3 33990596 to 33990606 10 - TSS region transcription start site region 32966
Gm9791 3 34005017 to 34005463 446 - pseudogene predicted pseudogene 9791
Tssr32967 3 34005490 to 34005514 24 - TSS region transcription start site region 32967
Gm46798 3 34008804 to 34011883 3079 - lncRNA gene predicted gene, 46798
Gm43077 3 34017708 to 34019882 2174 - lincRNA gene predicted gene 43077
Cpgi13066 3 34019454 to 34021055 1601 CpG island CpG island 13066
Tssr32968 3 34019797 to 34019812 15 - TSS region transcription start site region 32968
Tssr28785 3 34019869 to 34019883 14 + TSS region transcription start site region 28785
Tssr28786 3 34019901 to 34019916 15 + TSS region transcription start site region 28786
Tssr28787 3 34019917 to 34019926 9 + TSS region transcription start site region 28787
Tssr28788 3 34019932 to 34019939 7 + TSS region transcription start site region 28788
Tssr28789 3 34019947 to 34019963 16 + TSS region transcription start site region 28789
Fxr1 3 34020058 to 34069980 49922 + protein coding gene fragile X mental retardation gene 1, autosomal homolog
Tssr28790 3 34020075 to 34020082 7 + TSS region transcription start site region 28790
Tssr28791 3 34020083 to 34020110 27 + TSS region transcription start site region 28791
Tssr28792 3 34041092 to 34041107 15 + TSS region transcription start site region 28792
Tssr28793 3 34046061 to 34046078 17 + TSS region transcription start site region 28793
Tssr28794 3 34046430 to 34046474 44 + TSS region transcription start site region 28794
Tssr28795 3 34052271 to 34052275 4 + TSS region transcription start site region 28795
Gm43667 3 34054335 to 34055429 1094 - unclassified gene predicted gene 43667
Tssr28796 3 34057064 to 34057071 7 + TSS region transcription start site region 28796
Dnajc19 3 34057280 to 34081354 24074 - protein coding gene DnaJ heat shock protein family (Hsp40) member C19
Tssr28797 3 34069393 to 34069402 9 + TSS region transcription start site region 28797
Gm43668 3 34070659 to 34076000 5341 + unclassified gene predicted gene 43668
Tssr32969 3 34079037 to 34079052 15 - TSS region transcription start site region 32969
Tssr32970 3 34079060 to 34079069 9 - TSS region transcription start site region 32970
Cpgi13067 3 34080932 to 34081556 624 CpG island CpG island 13067
Tssr32971 3 34081256 to 34081347 91 - TSS region transcription start site region 32971
Tssr28798 3 34104437 to 34104447 10 + TSS region transcription start site region 28798
Tssr28799 3 34104448 to 34104475 27 + TSS region transcription start site region 28799
Tssr28800 3 34104481 to 34104496 15 + TSS region transcription start site region 28800
Tssr28801 3 34158726 to 34158728 2 + TSS region transcription start site region 28801
Gm5708 3 34183309 to 34184177 868 + pseudogene predicted gene 5708
Tssr28802 3 34196742 to 34196756 14 + TSS region transcription start site region 28802
Tssr28803 3 34196777 to 34196790 13 + TSS region transcription start site region 28803
Tssr28804 3 34196922 to 34196933 11 + TSS region transcription start site region 28804
Tssr28805 3 34202675 to 34202679 4 + TSS region transcription start site region 28805
Gm38505 3 34298172 to 34351712 53540 - lincRNA gene predicted gene, 38505
Tssr32972 3 34351674 to 34351682 8 - TSS region transcription start site region 32972
Tssr32973 3 34351685 to 34351703 18 - TSS region transcription start site region 32973
Tssr859 3 34408108 to 34408112 4 + TSS region transcription start site region 859
Gm34599 3 34416495 to 34418162 1667 + lincRNA gene predicted gene, 34599
Gm20515 3 34427373 to 34435097 7724 - lincRNA gene predicted gene 20515
Cpgi13068 3 34454098 to 34454596 498 CpG island CpG island 13068
Tssr28806 3 34454381 to 34454399 18 + TSS region transcription start site region 28806
Gm29135 3 34481428 to 34482207 779 - lincRNA gene predicted gene 29135
D3Mit180.2 3 34506577 to 34506746 169 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 180.2
D3Mit180 3 34506728 to 34506853 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 180
Tssr28807 3 34560194 to 34560203 9 + TSS region transcription start site region 28807
Tssr28808 3 34560212 to 34560224 12 + TSS region transcription start site region 28808
Gm27403 3 34560340 to 34560553 213 + unclassified non-coding RNA gene predicted gene, 27403
Tssr28809 3 34560344 to 34560350 6 + TSS region transcription start site region 28809
Tssr28810 3 34560360 to 34560386 26 + TSS region transcription start site region 28810
Sox2ot 3 34560381 to 34677993 117612 + lncRNA gene SOX2 overlapping transcript (non-protein coding)
Tssr28811 3 34560626 to 34560646 20 + TSS region transcription start site region 28811
Tssr28812 3 34561227 to 34561233 6 + TSS region transcription start site region 28812
Gm42695 3 34565265 to 34572202 6937 - lincRNA gene predicted gene 42695
Tssr28813 3 34589917 to 34589954 37 + TSS region transcription start site region 28813
Tssr28814 3 34590027 to 34590031 4 + TSS region transcription start site region 28814
Gm42205 3 34598519 to 34602248 3729 - lincRNA gene predicted gene, 42205
Tssr28815 3 34599809 to 34599816 7 + TSS region transcription start site region 28815
Tssr32974 3 34620378 to 34620381 3 - TSS region transcription start site region 32974
Cpgi13069 3 34634625 to 34634893 268 CpG island CpG island 13069
Tssr28816 3 34638216 to 34638228 12 + TSS region transcription start site region 28816
Tssr28817 3 34638321 to 34638342 21 + TSS region transcription start site region 28817
Tssr28818 3 34638344 to 34638371 27 + TSS region transcription start site region 28818
Mir1897 3 34638464 to 34638542 78 + miRNA gene microRNA 1897
Tssr28819 3 34640220 to 34640225 5 + TSS region transcription start site region 28819
D3Mit168 3 34640701 to 34640804 103 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 168
Cpgi13070 3 34640778 to 34640938 160 CpG island CpG island 13070
Cpgi13071 3 34641993 to 34642832 839 CpG island CpG island 13071
Tssr28820 3 34643115 to 34643120 5 + TSS region transcription start site region 28820
Gm42692 3 34643264 to 34646096 2832 + unclassified gene predicted gene 42692
Tssr32975 3 34648485 to 34648489 4 - TSS region transcription start site region 32975
Cpgi13072 3 34648719 to 34651529 2810 CpG island CpG island 13072
Tssr32976 3 34648952 to 34648963 11 - TSS region transcription start site region 32976
Tssr32977 3 34649724 to 34649735 11 - TSS region transcription start site region 32977
Tssr32978 3 34649756 to 34649769 13 - TSS region transcription start site region 32978
Tssr32979 3 34649847 to 34649875 28 - TSS region transcription start site region 32979
Tssr28821 3 34649923 to 34649934 11 + TSS region transcription start site region 28821
Tssr28822 3 34649987 to 34650005 18 + TSS region transcription start site region 28822
Tssr28823 3 34650024 to 34650050 26 + TSS region transcription start site region 28823
Tssr28824 3 34650174 to 34650189 15 + TSS region transcription start site region 28824
Tssr28825 3 34650222 to 34650233 11 + TSS region transcription start site region 28825
Sox2 3 34650405 to 34652461 2056 + protein coding gene SRY (sex determining region Y)-box 2
Tssr32980 3 34650714 to 34650720 6 - TSS region transcription start site region 32980
Tssr28826 3 34650766 to 34650780 14 + TSS region transcription start site region 28826
Tssr32981 3 34651036 to 34651047 11 - TSS region transcription start site region 32981
Tssr28827 3 34651071 to 34651082 11 + TSS region transcription start site region 28827
Gm27611 3 34653178 to 34653285 107 + unclassified non-coding RNA gene predicted gene, 27611
Tssr28828 3 34653586 to 34653593 7 + TSS region transcription start site region 28828
Tssr32982 3 34653989 to 34654008 19 - TSS region transcription start site region 32982
Cpgi13073 3 34661575 to 34661869 294 CpG island CpG island 13073
Cpgi13074 3 34662821 to 34664739 1918 CpG island CpG island 13074
Gm42693 3 34663659 to 34664289 630 - unclassified gene predicted gene 42693
Gm43206 3 34682633 to 34682746 113 + unclassified gene predicted gene 43206
Tssr28829 3 34684316 to 34684320 4 + TSS region transcription start site region 28829
Gm34941 3 34689378 to 34692921 3543 + lncRNA gene predicted gene, 34941
Cpgi13075 3 34692205 to 34692641 436 CpG island CpG island 13075
Tssr32983 3 34699450 to 34699456 6 - TSS region transcription start site region 32983
Gm3143 3 34699640 to 34716662 17022 - lincRNA gene predicted gene 3143
Tssr28830 3 34699945 to 34699947 2 + TSS region transcription start site region 28830
D3Nds55 3 34735381 to 34735538 157 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 55
Tssr28831 3 34757443 to 34757456 13 + TSS region transcription start site region 28831
Tssr32984 3 34757853 to 34757860 7 - TSS region transcription start site region 32984
Tssr32985 3 34757893 to 34757926 33 - TSS region transcription start site region 32985
Tssr32986 3 34757941 to 34757948 7 - TSS region transcription start site region 32986
Tssr32987 3 34757954 to 34757965 11 - TSS region transcription start site region 32987
Tssr28832 3 34758374 to 34758380 6 + TSS region transcription start site region 28832
Tssr28833 3 34760466 to 34760486 20 + TSS region transcription start site region 28833
Tssr32988 3 34761195 to 34761243 48 - TSS region transcription start site region 32988
Tssr32989 3 34761416 to 34761431 15 - TSS region transcription start site region 32989
Tssr28834 3 34764143 to 34764152 9 + TSS region transcription start site region 28834
Tssr28835 3 34764155 to 34764186 31 + TSS region transcription start site region 28835
Tssr28836 3 34764188 to 34764198 10 + TSS region transcription start site region 28836
Tssr28837 3 34764883 to 34764892 9 + TSS region transcription start site region 28837
Gm38509 3 34772075 to 34782346 10271 + lincRNA gene predicted gene, 38509
Tssr28838 3 34784126 to 34784131 5 + TSS region transcription start site region 28838
Tssr28839 3 34826605 to 34826646 41 + TSS region transcription start site region 28839
Tssr28840 3 34826651 to 34826658 7 + TSS region transcription start site region 28840
Tssr28841 3 34826666 to 34826671 5 + TSS region transcription start site region 28841
Gm21388 3 34826669 to 34879283 52614 + lincRNA gene predicted gene, 21388
Tssr32990 3 34861249 to 34861262 13 - TSS region transcription start site region 32990
D3Mit223 3 34913882 to 34914025 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 223
Mir6378 3 34922545 to 34922651 106 - miRNA gene microRNA 6378
Gm35255 3 34950227 to 34959531 9304 + lncRNA gene predicted gene, 35255
D3Mit331 3 34960436 to 34960547 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 331
Tssr28842 3 35113475 to 35113483 8 + TSS region transcription start site region 28842
Tssr28843 3 35113503 to 35113517 14 + TSS region transcription start site region 28843
Tgq13 3 35234019 to 35234019 0 QTL triglyceride QTL 13
1700017M07Rik 3 35256462 to 35276131 19669 - lincRNA gene RIKEN cDNA 1700017M07 gene
Gm35425 3 35318437 to 35330114 11677 + lncRNA gene predicted gene, 35425
Gm25442 3 35325614 to 35325705 91 + miRNA gene predicted gene, 25442
Gm38512 3 35337700 to 35405950 68250 - lncRNA gene predicted gene, 38512
Gm43078 3 35413833 to 35414000 167 + unclassified gene predicted gene 43078
Gm7733 3 35536882 to 35537701 819 - pseudogene predicted gene 7733
Tssr28844 3 35545880 to 35545883 3 + TSS region transcription start site region 28844
Ube2l3-ps1 3 35545894 to 35546329 435 + pseudogene ubiquitin-conjugating enzyme E2L 3, pseudogene 1
Gm6639 3 35597152 to 35666163 69011 - lincRNA gene predicted gene 6639
Tssr32991 3 35662288 to 35662299 11 - TSS region transcription start site region 32991
Tssr32992 3 35662320 to 35662325 5 - TSS region transcription start site region 32992
Tssr32993 3 35666159 to 35666173 14 - TSS region transcription start site region 32993
Tssr32994 3 35666193 to 35666201 8 - TSS region transcription start site region 32994
Tssr32995 3 35719649 to 35719659 10 - TSS region transcription start site region 32995
Tssr28845 3 35721257 to 35721266 9 + TSS region transcription start site region 28845
Tssr28846 3 35722085 to 35722096 11 + TSS region transcription start site region 28846
Tssr32996 3 35722934 to 35722945 11 - TSS region transcription start site region 32996
Tssr28847 3 35723055 to 35723078 23 + TSS region transcription start site region 28847
Gm25696 3 35735373 to 35735477 104 + snRNA gene predicted gene, 25696
Cpgi13076 3 35753796 to 35754903 1107 CpG island CpG island 13076
Tssr28848 3 35754089 to 35754114 25 + TSS region transcription start site region 28848
Atp11b 3 35754106 to 35856276 102170 + protein coding gene ATPase, class VI, type 11B
Tssr28849 3 35754121 to 35754135 14 + TSS region transcription start site region 28849
Tssr28850 3 35754155 to 35754166 11 + TSS region transcription start site region 28850
Tssr32997 3 35754410 to 35754421 11 - TSS region transcription start site region 32997
Tssr32998 3 35754430 to 35754457 27 - TSS region transcription start site region 32998
Tssr32999 3 35754474 to 35754483 9 - TSS region transcription start site region 32999
Tssr33000 3 35754509 to 35754516 7 - TSS region transcription start site region 33000
Tssr33001 3 35754639 to 35754641 2 - TSS region transcription start site region 33001
Tssr33002 3 35754733 to 35754749 16 - TSS region transcription start site region 33002
Tssr28851 3 35762273 to 35762323 50 + TSS region transcription start site region 28851
Tssr28852 3 35783022 to 35783060 38 + TSS region transcription start site region 28852
Tssr28853 3 35822581 to 35822585 4 + TSS region transcription start site region 28853
Gm43203 3 35845342 to 35845899 557 + unclassified gene predicted gene 43203
D3Mit239 3 35847656 to 35847856 200 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 239
Tssr28854 3 35855835 to 35855844 9 + TSS region transcription start site region 28854
1110021P09Rik 3 35861622 to 35862120 498 unclassified gene RIKEN cDNA 1110021P09 gene
Tssr28855 3 35863802 to 35863805 3 + TSS region transcription start site region 28855
Gm7741 3 35863877 to 35864865 988 + pseudogene predicted gene 7741
Gm20595 3 35875646 to 35883349 7703 - pseudogene predicted gene, 20595