Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:32408236-33868240

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pik3ca 3 32397671 to 32468486 70815 + protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
Tssr32930 3 32408977 to 32408984 7 - TSS region transcription start site region 32930
Tssr28752 3 32414845 to 32414893 48 + TSS region transcription start site region 28752
Tssr854 3 32426093 to 32426096 3 + TSS region transcription start site region 854
Gm37123 3 32454587 to 32455757 1170 + unclassified gene predicted gene, 37123
Kcnmb3 3 32471588 to 32492231 20643 - protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 3
Cpgi13057 3 32510223 to 32511145 922 CpG island CpG island 13057
Tssr28753 3 32510538 to 32510561 23 + TSS region transcription start site region 28753
Zfp639 3 32510550 to 32520833 10283 + protein coding gene zinc finger protein 639
Tssr28754 3 32510565 to 32510641 76 + TSS region transcription start site region 28754
Tssr28755 3 32510690 to 32510715 25 + TSS region transcription start site region 28755
Gm37592 3 32511803 to 32512344 541 - antisense lncRNA gene predicted gene, 37592
Cpgi13058 3 32529327 to 32529895 568 CpG island CpG island 13058
Tssr28756 3 32529452 to 32529527 75 + TSS region transcription start site region 28756
Mfn1 3 32529463 to 32579225 49762 + protein coding gene mitofusin 1
Tssr28757 3 32529532 to 32529543 11 + TSS region transcription start site region 28757
Tssr28758 3 32529557 to 32529560 3 + TSS region transcription start site region 28758
Tssr28759 3 32529579 to 32529628 49 + TSS region transcription start site region 28759
Tssr28760 3 32529638 to 32529643 5 + TSS region transcription start site region 28760
Tssr855 3 32547875 to 32547876 1 - TSS region transcription start site region 855
Gnb4 3 32580332 to 32616535 36203 - protein coding gene guanine nucleotide binding protein (G protein), beta 4
Pwgrq13 3 32581611 to 58109942 25528331 QTL post-weaning growth rate QTL 13
Pwgrq12 3 32581611 to 58109942 25528331 QTL post-weaning growth rate QTL 12
Tssr32931 3 32599374 to 32599383 9 - TSS region transcription start site region 32931
Gm37640 3 32610861 to 32613513 2652 + antisense lncRNA gene predicted gene, 37640
Tssr32932 3 32615291 to 32615297 6 - TSS region transcription start site region 32932
Cpgi13059 3 32615895 to 32617250 1355 CpG island CpG island 13059
Tssr32933 3 32616463 to 32616473 10 - TSS region transcription start site region 32933
Tssr32934 3 32616479 to 32616564 85 - TSS region transcription start site region 32934
Tssr32935 3 32616673 to 32616689 16 - TSS region transcription start site region 32935
Tssr32936 3 32616875 to 32616892 17 - TSS region transcription start site region 32936
D3Mit240 3 32630102 to 32630238 136 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 240
Cpgi13060 3 32648672 to 32648895 223 CpG island CpG island 13060
Tssr28761 3 32708222 to 32708234 12 + TSS region transcription start site region 28761
Tssr28762 3 32708255 to 32708260 5 + TSS region transcription start site region 28762
Tssr28763 3 32708267 to 32708270 3 + TSS region transcription start site region 28763
Cpgi13061 3 32708316 to 32709419 1103 CpG island CpG island 13061
Actl6a 3 32708546 to 32726973 18427 + protein coding gene actin-like 6A
Tssr28764 3 32708670 to 32708738 68 + TSS region transcription start site region 28764
Tssr28765 3 32708745 to 32708756 11 + TSS region transcription start site region 28765
Tssr28766 3 32708757 to 32708764 7 + TSS region transcription start site region 28766
Tssr28767 3 32708765 to 32708772 7 + TSS region transcription start site region 28767
Tssr28768 3 32708968 to 32709010 42 + TSS region transcription start site region 28768
Tssr28769 3 32712189 to 32712195 6 + TSS region transcription start site region 28769
Gm37353 3 32721777 to 32722089 312 - unclassified gene predicted gene, 37353
Mrpl47 3 32727497 to 32736755 9258 - protein coding gene mitochondrial ribosomal protein L47
Cpgi13062 3 32736250 to 32737724 1474 CpG island CpG island 13062
Tssr32937 3 32736743 to 32736777 34 - TSS region transcription start site region 32937
Tssr32938 3 32736779 to 32736782 3 - TSS region transcription start site region 32938
Tssr28770 3 32737045 to 32737082 37 + TSS region transcription start site region 28770
Ndufb5 3 32737063 to 32751559 14496 + protein coding gene NADH:ubiquinone oxidoreductase subunit B5
Tssr32939 3 32764049 to 32764083 34 - TSS region transcription start site region 32939
Cpgi13063 3 32817275 to 32818244 969 CpG island CpG island 13063
Tssr28771 3 32817520 to 32817576 56 + TSS region transcription start site region 28771
Usp13 3 32817546 to 32938071 120525 + protein coding gene ubiquitin specific peptidase 13 (isopeptidase T-3)
Tssr28772 3 32817582 to 32817605 23 + TSS region transcription start site region 28772
Tssr28773 3 32817606 to 32817637 31 + TSS region transcription start site region 28773
Tssr28774 3 32817642 to 32817661 19 + TSS region transcription start site region 28774
Tssr28775 3 32818345 to 32818346 1 + TSS region transcription start site region 28775
Tssr28776 3 32820198 to 32820200 2 + TSS region transcription start site region 28776
Tssr32940 3 32864609 to 32864611 2 - TSS region transcription start site region 32940
Gm15574 3 32880011 to 32880608 597 - pseudogene predicted gene 15574
Tssr856 3 32905713 to 32905717 4 + TSS region transcription start site region 856
Tssr857 3 32906749 to 32906752 3 + TSS region transcription start site region 857
Tssr28777 3 32939306 to 32939327 21 + TSS region transcription start site region 28777
Gm37459 3 32939314 to 32983301 43987 + antisense lncRNA gene predicted gene, 37459
Pex5l 3 32949408 to 33143247 193839 - protein coding gene peroxisomal biogenesis factor 5-like
Tssr32941 3 32949789 to 32949811 22 - TSS region transcription start site region 32941
Tssr32942 3 32985076 to 32985085 9 - TSS region transcription start site region 32942
D3Mit272 3 33007369 to 33007465 96 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 272
Tssr28778 3 33011955 to 33011959 4 + TSS region transcription start site region 28778
Gm23214 3 33011958 to 33012114 156 + snRNA gene predicted gene, 23214
4930419G24Rik 3 33024777 to 33088607 63830 + antisense lncRNA gene RIKEN cDNA 4930419G24 gene
Gm37443 3 33034228 to 33037054 2826 - unclassified gene predicted gene, 37443
D3Mit273 3 33049723 to 33049839 116 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 273
D3Mit181 3 33066608 to 33066696 88 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 181
D3Mit181.2 3 33066733 to 33066890 157 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 181.2
Gm19445 3 33073919 to 33076356 2437 - unclassified gene predicted gene, 19445
Tssr32943 3 33079252 to 33079258 6 - TSS region transcription start site region 32943
Tssr32944 3 33082004 to 33082030 26 - TSS region transcription start site region 32944
Tssr32945 3 33082845 to 33082868 23 - TSS region transcription start site region 32945
Tssr32946 3 33082873 to 33082887 14 - TSS region transcription start site region 32946
Tssr32947 3 33082979 to 33082988 9 - TSS region transcription start site region 32947
Tssr32948 3 33083016 to 33083046 30 - TSS region transcription start site region 32948
Tssr32949 3 33083060 to 33083069 9 - TSS region transcription start site region 32949
Tssr32950 3 33083073 to 33083076 3 - TSS region transcription start site region 32950
Tssr32951 3 33110786 to 33110796 10 - TSS region transcription start site region 32951
Tssr32952 3 33138236 to 33138240 4 - TSS region transcription start site region 32952
Cpgi13064 3 33142333 to 33143627 1294 CpG island CpG island 13064
Tssr32953 3 33142985 to 33143000 15 - TSS region transcription start site region 32953
Tssr32954 3 33143008 to 33143024 16 - TSS region transcription start site region 32954
Tssr32955 3 33143025 to 33143086 61 - TSS region transcription start site region 32955
Tssr32956 3 33143124 to 33143159 35 - TSS region transcription start site region 32956
Tssr32957 3 33143171 to 33143186 15 - TSS region transcription start site region 32957
Tssr32958 3 33143199 to 33143220 21 - TSS region transcription start site region 32958
Tssr32959 3 33143227 to 33143266 39 - TSS region transcription start site region 32959
Tssr32960 3 33143275 to 33143292 17 - TSS region transcription start site region 32960
Tssr32961 3 33143294 to 33143312 18 - TSS region transcription start site region 32961
Gm37128 3 33190805 to 33191036 231 + pseudogene predicted gene, 37128
Gm27974 3 33260716 to 33260820 104 - miRNA gene predicted gene, 27974
D3Mit206 3 33273052 to 33273155 103 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 206
Mdmsc1 3 33273052 to 45962044 12688992 QTL modifier of muscularity 1
D3Mit206.1 3 33273137 to 33273248 111 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 206.1
Gm37031 3 33283118 to 33285647 2529 + unclassified gene predicted gene, 37031
Tssr28779 3 33313163 to 33313167 4 + TSS region transcription start site region 28779
Gm24780 3 33393057 to 33393199 142 - snoRNA gene predicted gene, 24780
Gm37398 3 33393382 to 33394847 1465 - unclassified gene predicted gene, 37398
Gm34205 3 33540268 to 33543422 3154 + lncRNA gene predicted gene, 34205
Tssr28780 3 33621578 to 33621590 12 + TSS region transcription start site region 28780
Gm5845 3 33621608 to 33622403 795 + pseudogene predicted gene 5845
Gm42694 3 33684508 to 33684865 357 - pseudogene predicted gene 42694
Gm42203 3 33686964 to 33692001 5037 - lncRNA gene predicted gene, 42203
Gm43666 3 33703355 to 33759616 56261 - lincRNA gene predicted gene 43666
Tssr858 3 33720115 to 33720120 5 + TSS region transcription start site region 858
Gm18611 3 33730667 to 33731350 683 + pseudogene predicted gene, 18611
Del(3)3Lt 3 33746227 to 33750515 4288 cytogenetic marker deletion, Chr 3, Edward H Leiter 3
Cpgi13065 3 33799573 to 33800756 1183 CpG island CpG island 13065
Tssr28781 3 33799791 to 33799809 18 + TSS region transcription start site region 28781
Ttc14 3 33800022 to 33814860 14838 + protein coding gene tetratricopeptide repeat domain 14
Tssr28782 3 33800144 to 33800153 9 + TSS region transcription start site region 28782
Tssr28783 3 33800158 to 33800234 76 + TSS region transcription start site region 28783
Tssr32962 3 33801683 to 33801694 11 - TSS region transcription start site region 32962
Tssr28784 3 33807274 to 33807286 12 + TSS region transcription start site region 28784
Ccdc39 3 33812362 to 33844310 31948 - protein coding gene coiled-coil domain containing 39
Tssr32963 3 33812733 to 33812736 3 - TSS region transcription start site region 32963
Gm43140 3 33817256 to 33817946 690 + antisense lncRNA gene predicted gene 43140
Tssr32964 3 33844212 to 33844248 36 - TSS region transcription start site region 32964
Tssr32965 3 33844255 to 33844313 58 - TSS region transcription start site region 32965
4930431L21Rik 3 33866813 to 33897584 30771 - lincRNA gene RIKEN cDNA 4930431L21 gene