Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:31429212-32539230

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm6558 3 31644815 to 31687842 43027 - pseudogene predicted gene 6558
Tssr28732 3 31686418 to 31686438 20 + TSS region transcription start site region 28732
Gm33886 3 31686425 to 31692135 5710 + lncRNA gene predicted gene, 33886
Tssr32919 3 31690584 to 31690592 8 - TSS region transcription start site region 32919
Tssr853 3 31813206 to 31813209 3 + TSS region transcription start site region 853
Gm34031 3 31898827 to 31902118 3291 - lncRNA gene predicted gene, 34031
Kcnmb2 3 31902507 to 32200180 297673 + protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 2
Tssr28733 3 31902648 to 31902659 11 + TSS region transcription start site region 28733
Tssr28734 3 31902666 to 31902680 14 + TSS region transcription start site region 28734
Tssr28735 3 31954752 to 31954784 32 + TSS region transcription start site region 28735
Gm37834 3 31954764 to 31957798 3034 + unclassified gene predicted gene, 37834
Tssr28736 3 31954791 to 31954798 7 + TSS region transcription start site region 28736
Tssr28737 3 31954821 to 31954832 11 + TSS region transcription start site region 28737
Tssr28738 3 31984212 to 31984230 18 + TSS region transcription start site region 28738
D3Mit179 3 32000885 to 32001034 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 179
repro26 3 32001034 to 7891493 -24109541 heritable phenotypic marker reproductive mutant 26, JAX Reproductive Mutagenesis Program
D3Ertd797e 3 32022757 to 32022998 241 DNA segment DNA segment, Chr 3, ERATO Doi 797, expressed
Tssr28739 3 32067276 to 32067309 33 + TSS region transcription start site region 28739
Tssr28740 3 32074095 to 32074101 6 + TSS region transcription start site region 28740
D3Mit330 3 32122623 to 32122747 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 330
Gm42201 3 32237531 to 32326307 88776 - lncRNA gene predicted gene, 42201
Gm37770 3 32260333 to 32261104 771 + pseudogene predicted gene, 37770
D3Mit167 3 32271826 to 32271973 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 167
D3Mit167.2 3 32271943 to 32272063 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 167.2
Tssr28741 3 32292342 to 32292343 1 + TSS region transcription start site region 28741
Zmat3 3 32334792 to 32365665 30873 - protein coding gene zinc finger matrin type 3
Tssr32920 3 32340560 to 32340585 25 - TSS region transcription start site region 32920
Tssr32921 3 32341145 to 32341164 19 - TSS region transcription start site region 32921
Tssr32922 3 32341205 to 32341236 31 - TSS region transcription start site region 32922
Cpgi13054 3 32341305 to 32341753 448 CpG island CpG island 13054
Tssr28742 3 32364392 to 32364404 12 + TSS region transcription start site region 28742
Tssr28743 3 32364911 to 32364928 17 + TSS region transcription start site region 28743
Cpgi13055 3 32364944 to 32366359 1415 CpG island CpG island 13055
Tssr32923 3 32365144 to 32365155 11 - TSS region transcription start site region 32923
Tssr32924 3 32365183 to 32365218 35 - TSS region transcription start site region 32924
Tssr28744 3 32365306 to 32365326 20 + TSS region transcription start site region 28744
Tssr28745 3 32365336 to 32365353 17 + TSS region transcription start site region 28745
Tssr32925 3 32365423 to 32365426 3 - TSS region transcription start site region 32925
4930429B21Rik 3 32365489 to 32367438 1949 + lncRNA gene RIKEN cDNA 4930429B21 gene
Tssr32926 3 32365608 to 32365622 14 - TSS region transcription start site region 32926
Tssr32927 3 32365643 to 32365691 48 - TSS region transcription start site region 32927
Tssr32928 3 32365892 to 32365913 21 - TSS region transcription start site region 32928
Gm36990 3 32371578 to 32372989 1411 - unclassified gene predicted gene, 36990
Gm42202 3 32378980 to 32384701 5721 - lncRNA gene predicted gene, 42202
Cpgi13056 3 32396687 to 32398073 1386 CpG island CpG island 13056
Tssr28746 3 32397026 to 32397087 61 + TSS region transcription start site region 28746
Tssr28747 3 32397107 to 32397144 37 + TSS region transcription start site region 28747
Tssr28748 3 32397150 to 32397179 29 + TSS region transcription start site region 28748
Tssr28749 3 32397238 to 32397265 27 + TSS region transcription start site region 28749
Tssr28750 3 32397268 to 32397296 28 + TSS region transcription start site region 28750
Pik3ca 3 32397671 to 32468486 70815 + protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
Tssr32929 3 32398217 to 32398226 9 - TSS region transcription start site region 32929
Tssr28751 3 32398460 to 32398469 9 + TSS region transcription start site region 28751
Tssr32930 3 32408977 to 32408984 7 - TSS region transcription start site region 32930
Tssr28752 3 32414845 to 32414893 48 + TSS region transcription start site region 28752
Tssr854 3 32426093 to 32426096 3 + TSS region transcription start site region 854
Gm37123 3 32454587 to 32455757 1170 + unclassified gene predicted gene, 37123
Kcnmb3 3 32471588 to 32492231 20643 - protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 3
Cpgi13057 3 32510223 to 32511145 922 CpG island CpG island 13057
Tssr28753 3 32510538 to 32510561 23 + TSS region transcription start site region 28753
Zfp639 3 32510550 to 32520833 10283 + protein coding gene zinc finger protein 639
Tssr28754 3 32510565 to 32510641 76 + TSS region transcription start site region 28754
Tssr28755 3 32510690 to 32510715 25 + TSS region transcription start site region 28755
Gm37592 3 32511803 to 32512344 541 - antisense lncRNA gene predicted gene, 37592
Cpgi13058 3 32529327 to 32529895 568 CpG island CpG island 13058
Tssr28756 3 32529452 to 32529527 75 + TSS region transcription start site region 28756
Mfn1 3 32529463 to 32579225 49762 + protein coding gene mitofusin 1
Tssr28757 3 32529532 to 32529543 11 + TSS region transcription start site region 28757
Tssr28758 3 32529557 to 32529560 3 + TSS region transcription start site region 28758
Tssr28759 3 32529579 to 32529628 49 + TSS region transcription start site region 28759
Tssr28760 3 32529638 to 32529643 5 + TSS region transcription start site region 28760