Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:30806425-32572135

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq8 3 24714068 to 31277954 6563886 QTL conditioned fear QTL 8
Sec62 3 30792875 to 30821263 28388 + protein coding gene SEC62 homolog (S. cerevisiae)
Tssr28694 3 30809817 to 30809860 43 + TSS region transcription start site region 28694
D3Dcr1 3 30811631 to 30811726 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 1
Gm38080 3 30828565 to 30828832 267 - pseudogene predicted gene, 38080
Gm42198 3 30841537 to 30851993 10456 - lncRNA gene predicted gene, 42198
Gm42199 3 30852483 to 30855860 3377 - lncRNA gene predicted gene, 42199
Cpgi13044 3 30855572 to 30856561 989 CpG island CpG island 13044
Tssr28695 3 30855730 to 30855758 28 + TSS region transcription start site region 28695
Tssr28696 3 30855946 to 30856002 56 + TSS region transcription start site region 28696
Gpr160 3 30855950 to 30897192 41242 + protein coding gene G protein-coupled receptor 160
Tssr28697 3 30856004 to 30856007 3 + TSS region transcription start site region 28697
Tssr28698 3 30856014 to 30856026 12 + TSS region transcription start site region 28698
Tssr28699 3 30864269 to 30864310 41 + TSS region transcription start site region 28699
Tssr28700 3 30864313 to 30864324 11 + TSS region transcription start site region 28700
Phc3 3 30899371 to 30969415 70044 - protein coding gene polyhomeotic 3
Tssr32906 3 30942443 to 30942487 44 - TSS region transcription start site region 32906
Tssr32907 3 30950923 to 30950939 16 - TSS region transcription start site region 32907
Tssr32908 3 30955219 to 30955243 24 - TSS region transcription start site region 32908
9530022L04Rik 3 30957329 to 30957638 309 - unclassified gene RIKEN cDNA 9530022L04 gene
Cpgi13045 3 30968547 to 30969674 1127 CpG island CpG island 13045
Tssr32909 3 30969399 to 30969425 26 - TSS region transcription start site region 32909
Gm2979 3 30974649 to 30975111 462 + pseudogene predicted gene 2979
Cpgi13046 3 30995356 to 30996365 1009 CpG island CpG island 13046
Prkci 3 30995742 to 31052740 56998 + protein coding gene protein kinase C, iota
Tssr28701 3 30995754 to 30995868 114 + TSS region transcription start site region 28701
D3Dcr2 3 31010839 to 31010945 106 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 2
Tssr28702 3 31017895 to 31017918 23 + TSS region transcription start site region 28702
Tssr28703 3 31038950 to 31038966 16 + TSS region transcription start site region 28703
Mir7008 3 31038966 to 31039028 62 + miRNA gene microRNA 7008
Cpgi13047 3 31056815 to 31057077 262 CpG island CpG island 13047
Gm33641 3 31061302 to 31066692 5390 + lncRNA gene predicted gene, 33641
Gm33694 3 31062428 to 31079942 17514 - lncRNA gene predicted gene, 33694
Tssr28704 3 31076088 to 31076091 3 + TSS region transcription start site region 28704
Tssr32910 3 31079627 to 31079661 34 - TSS region transcription start site region 32910
Tssr28705 3 31091712 to 31091729 17 + TSS region transcription start site region 28705
Cpgi13048 3 31093706 to 31095952 2246 CpG island CpG island 13048
Tssr28706 3 31093892 to 31093907 15 + TSS region transcription start site region 28706
Tssr28707 3 31094017 to 31094050 33 + TSS region transcription start site region 28707
Tssr28708 3 31094666 to 31094688 22 + TSS region transcription start site region 28708
Tssr28709 3 31094694 to 31094712 18 + TSS region transcription start site region 28709
Tssr28710 3 31094719 to 31094729 10 + TSS region transcription start site region 28710
Tssr28711 3 31094937 to 31094948 11 + TSS region transcription start site region 28711
Tssr28712 3 31094961 to 31094976 15 + TSS region transcription start site region 28712
Tssr28713 3 31095052 to 31095123 71 + TSS region transcription start site region 28713
Skil 3 31095058 to 31122577 27519 + protein coding gene SKI-like
Tssr32911 3 31095827 to 31095844 17 - TSS region transcription start site region 32911
Tssr28714 3 31095897 to 31095932 35 + TSS region transcription start site region 28714
Tssr28715 3 31096374 to 31096378 4 + TSS region transcription start site region 28715
Tssr28716 3 31096840 to 31096854 14 + TSS region transcription start site region 28716
Tssr28717 3 31098271 to 31098288 17 + TSS region transcription start site region 28717
Tssr28718 3 31120030 to 31120051 21 + TSS region transcription start site region 28718
Tssr28719 3 31120450 to 31120463 13 + TSS region transcription start site region 28719
Tssr28720 3 31121404 to 31121423 19 + TSS region transcription start site region 28720
Tssr28721 3 31121697 to 31121701 4 + TSS region transcription start site region 28721
Tssr852 3 31126521 to 31126528 7 + TSS region transcription start site region 852
Cpgi13049 3 31149680 to 31150359 679 CpG island CpG island 13049
Tssr28722 3 31149750 to 31149765 15 + TSS region transcription start site region 28722
Tssr28723 3 31149771 to 31149787 16 + TSS region transcription start site region 28723
Cldn11 3 31149920 to 31164324 14404 + protein coding gene claudin 11
Tssr28724 3 31149934 to 31149958 24 + TSS region transcription start site region 28724
Tssr28725 3 31149964 to 31149979 15 + TSS region transcription start site region 28725
Cpgi13050 3 31158749 to 31158909 160 CpG island CpG island 13050
Cpgi13051 3 31163020 to 31163299 279 CpG island CpG island 13051
Tssr28726 3 31163138 to 31163151 13 + TSS region transcription start site region 28726
Tssr28727 3 31163352 to 31163363 11 + TSS region transcription start site region 28727
Tssr28728 3 31163377 to 31163388 11 + TSS region transcription start site region 28728
Tssr28729 3 31163876 to 31163890 14 + TSS region transcription start site region 28729
Slc7a14 3 31202858 to 31310378 107520 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 14
Tssr32912 3 31208066 to 31208076 10 - TSS region transcription start site region 32912
Cpgi13052 3 31209195 to 31209348 153 CpG island CpG island 13052
Tssr28730 3 31220057 to 31220070 13 + TSS region transcription start site region 28730
Tssr32913 3 31225211 to 31225213 2 - TSS region transcription start site region 32913
Tssr28731 3 31228479 to 31228481 2 + TSS region transcription start site region 28731
Gm33834 3 31232620 to 31237362 4742 + lncRNA gene predicted gene, 33834
D3Mit151 3 31238343 to 31238491 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 151
D3Dcr3 3 31247299 to 31247394 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 3
Gm15496 3 31285587 to 31316891 31304 + antisense lncRNA gene predicted gene 15496
Cpgi13053 3 31309144 to 31310392 1248 CpG island CpG island 13053
Tssr32914 3 31310218 to 31310231 13 - TSS region transcription start site region 32914
Tssr32915 3 31310246 to 31310265 19 - TSS region transcription start site region 32915
Tssr32916 3 31310267 to 31310324 57 - TSS region transcription start site region 32916
Tssr32917 3 31310349 to 31310373 24 - TSS region transcription start site region 32917
Tssr32918 3 31330937 to 31330940 3 - TSS region transcription start site region 32918
Gm38025 3 31341012 to 31345280 4268 + lincRNA gene predicted gene, 38025
Gm6558 3 31644815 to 31687842 43027 - pseudogene predicted gene 6558
Tssr28732 3 31686418 to 31686438 20 + TSS region transcription start site region 28732
Gm33886 3 31686425 to 31692135 5710 + lncRNA gene predicted gene, 33886
Tssr32919 3 31690584 to 31690592 8 - TSS region transcription start site region 32919
Tssr853 3 31813206 to 31813209 3 + TSS region transcription start site region 853
Gm34031 3 31898827 to 31902118 3291 - lncRNA gene predicted gene, 34031
Kcnmb2 3 31902507 to 32200180 297673 + protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 2
Tssr28733 3 31902648 to 31902659 11 + TSS region transcription start site region 28733
Tssr28734 3 31902666 to 31902680 14 + TSS region transcription start site region 28734
Tssr28735 3 31954752 to 31954784 32 + TSS region transcription start site region 28735
Gm37834 3 31954764 to 31957798 3034 + unclassified gene predicted gene, 37834
Tssr28736 3 31954791 to 31954798 7 + TSS region transcription start site region 28736
Tssr28737 3 31954821 to 31954832 11 + TSS region transcription start site region 28737
Tssr28738 3 31984212 to 31984230 18 + TSS region transcription start site region 28738
D3Mit179 3 32000885 to 32001034 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 179
repro26 3 32001034 to 7891493 -24109541 heritable phenotypic marker reproductive mutant 26, JAX Reproductive Mutagenesis Program
D3Ertd797e 3 32022757 to 32022998 241 DNA segment DNA segment, Chr 3, ERATO Doi 797, expressed
Tssr28739 3 32067276 to 32067309 33 + TSS region transcription start site region 28739
Tssr28740 3 32074095 to 32074101 6 + TSS region transcription start site region 28740
D3Mit330 3 32122623 to 32122747 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 330
Gm42201 3 32237531 to 32326307 88776 - lncRNA gene predicted gene, 42201
Gm37770 3 32260333 to 32261104 771 + pseudogene predicted gene, 37770
D3Mit167 3 32271826 to 32271973 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 167
D3Mit167.2 3 32271943 to 32272063 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 167.2
Tssr28741 3 32292342 to 32292343 1 + TSS region transcription start site region 28741
Zmat3 3 32334792 to 32365665 30873 - protein coding gene zinc finger matrin type 3
Tssr32920 3 32340560 to 32340585 25 - TSS region transcription start site region 32920
Tssr32921 3 32341145 to 32341164 19 - TSS region transcription start site region 32921
Tssr32922 3 32341205 to 32341236 31 - TSS region transcription start site region 32922
Cpgi13054 3 32341305 to 32341753 448 CpG island CpG island 13054
Tssr28742 3 32364392 to 32364404 12 + TSS region transcription start site region 28742
Tssr28743 3 32364911 to 32364928 17 + TSS region transcription start site region 28743
Cpgi13055 3 32364944 to 32366359 1415 CpG island CpG island 13055
Tssr32923 3 32365144 to 32365155 11 - TSS region transcription start site region 32923
Tssr32924 3 32365183 to 32365218 35 - TSS region transcription start site region 32924
Tssr28744 3 32365306 to 32365326 20 + TSS region transcription start site region 28744
Tssr28745 3 32365336 to 32365353 17 + TSS region transcription start site region 28745
Tssr32925 3 32365423 to 32365426 3 - TSS region transcription start site region 32925
4930429B21Rik 3 32365489 to 32367438 1949 + lncRNA gene RIKEN cDNA 4930429B21 gene
Tssr32926 3 32365608 to 32365622 14 - TSS region transcription start site region 32926
Tssr32927 3 32365643 to 32365691 48 - TSS region transcription start site region 32927
Tssr32928 3 32365892 to 32365913 21 - TSS region transcription start site region 32928
Gm36990 3 32371578 to 32372989 1411 - unclassified gene predicted gene, 36990
Gm42202 3 32378980 to 32384701 5721 - lncRNA gene predicted gene, 42202
Cpgi13056 3 32396687 to 32398073 1386 CpG island CpG island 13056
Tssr28746 3 32397026 to 32397087 61 + TSS region transcription start site region 28746
Tssr28747 3 32397107 to 32397144 37 + TSS region transcription start site region 28747
Tssr28748 3 32397150 to 32397179 29 + TSS region transcription start site region 28748
Tssr28749 3 32397238 to 32397265 27 + TSS region transcription start site region 28749
Tssr28750 3 32397268 to 32397296 28 + TSS region transcription start site region 28750
Pik3ca 3 32397671 to 32468486 70815 + protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
Tssr32929 3 32398217 to 32398226 9 - TSS region transcription start site region 32929
Tssr28751 3 32398460 to 32398469 9 + TSS region transcription start site region 28751
Tssr32930 3 32408977 to 32408984 7 - TSS region transcription start site region 32930
Tssr28752 3 32414845 to 32414893 48 + TSS region transcription start site region 28752
Tssr854 3 32426093 to 32426096 3 + TSS region transcription start site region 854
Gm37123 3 32454587 to 32455757 1170 + unclassified gene predicted gene, 37123
Kcnmb3 3 32471588 to 32492231 20643 - protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 3
Cpgi13057 3 32510223 to 32511145 922 CpG island CpG island 13057
Tssr28753 3 32510538 to 32510561 23 + TSS region transcription start site region 28753
Zfp639 3 32510550 to 32520833 10283 + protein coding gene zinc finger protein 639
Tssr28754 3 32510565 to 32510641 76 + TSS region transcription start site region 28754
Tssr28755 3 32510690 to 32510715 25 + TSS region transcription start site region 28755
Gm37592 3 32511803 to 32512344 541 - antisense lncRNA gene predicted gene, 37592
Cpgi13058 3 32529327 to 32529895 568 CpG island CpG island 13058
Tssr28756 3 32529452 to 32529527 75 + TSS region transcription start site region 28756
Mfn1 3 32529463 to 32579225 49762 + protein coding gene mitofusin 1
Tssr28757 3 32529532 to 32529543 11 + TSS region transcription start site region 28757
Tssr28758 3 32529557 to 32529560 3 + TSS region transcription start site region 28758
Tssr28759 3 32529579 to 32529628 49 + TSS region transcription start site region 28759
Tssr28760 3 32529638 to 32529643 5 + TSS region transcription start site region 28760
Tssr855 3 32547875 to 32547876 1 - TSS region transcription start site region 855