Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:30788343-31688491

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq8 3 24714068 to 31277954 6563886 QTL conditioned fear QTL 8
Tssr28687 3 30791900 to 30791903 3 + TSS region transcription start site region 28687
4933429H19Rik 3 30792570 to 30793564 994 - antisense lncRNA gene RIKEN cDNA 4933429H19 gene
Cpgi13043 3 30792754 to 30794089 1335 CpG island CpG island 13043
Sec62 3 30792875 to 30821263 28388 + protein coding gene SEC62 homolog (S. cerevisiae)
Tssr28688 3 30793033 to 30793067 34 + TSS region transcription start site region 28688
Tssr28689 3 30793081 to 30793098 17 + TSS region transcription start site region 28689
Tssr28690 3 30793128 to 30793147 19 + TSS region transcription start site region 28690
Tssr32904 3 30793205 to 30793232 27 - TSS region transcription start site region 32904
Tssr28691 3 30793301 to 30793353 52 + TSS region transcription start site region 28691
Tssr32905 3 30793549 to 30793595 46 - TSS region transcription start site region 32905
Tssr28692 3 30801093 to 30801105 12 + TSS region transcription start site region 28692
Tssr28693 3 30801111 to 30801128 17 + TSS region transcription start site region 28693
Tssr28694 3 30809817 to 30809860 43 + TSS region transcription start site region 28694
D3Dcr1 3 30811631 to 30811726 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 1
Gm38080 3 30828565 to 30828832 267 - pseudogene predicted gene, 38080
Gm42198 3 30841537 to 30851993 10456 - lncRNA gene predicted gene, 42198
Gm42199 3 30852483 to 30855860 3377 - lncRNA gene predicted gene, 42199
Cpgi13044 3 30855572 to 30856561 989 CpG island CpG island 13044
Tssr28695 3 30855730 to 30855758 28 + TSS region transcription start site region 28695
Tssr28696 3 30855946 to 30856002 56 + TSS region transcription start site region 28696
Gpr160 3 30855950 to 30897192 41242 + protein coding gene G protein-coupled receptor 160
Tssr28697 3 30856004 to 30856007 3 + TSS region transcription start site region 28697
Tssr28698 3 30856014 to 30856026 12 + TSS region transcription start site region 28698
Tssr28699 3 30864269 to 30864310 41 + TSS region transcription start site region 28699
Tssr28700 3 30864313 to 30864324 11 + TSS region transcription start site region 28700
Phc3 3 30899371 to 30969415 70044 - protein coding gene polyhomeotic 3
Tssr32906 3 30942443 to 30942487 44 - TSS region transcription start site region 32906
Tssr32907 3 30950923 to 30950939 16 - TSS region transcription start site region 32907
Tssr32908 3 30955219 to 30955243 24 - TSS region transcription start site region 32908
9530022L04Rik 3 30957329 to 30957638 309 - unclassified gene RIKEN cDNA 9530022L04 gene
Cpgi13045 3 30968547 to 30969674 1127 CpG island CpG island 13045
Tssr32909 3 30969399 to 30969425 26 - TSS region transcription start site region 32909
Gm2979 3 30974649 to 30975111 462 + pseudogene predicted gene 2979
Cpgi13046 3 30995356 to 30996365 1009 CpG island CpG island 13046
Prkci 3 30995742 to 31052740 56998 + protein coding gene protein kinase C, iota
Tssr28701 3 30995754 to 30995868 114 + TSS region transcription start site region 28701
D3Dcr2 3 31010839 to 31010945 106 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 2
Tssr28702 3 31017895 to 31017918 23 + TSS region transcription start site region 28702
Tssr28703 3 31038950 to 31038966 16 + TSS region transcription start site region 28703
Mir7008 3 31038966 to 31039028 62 + miRNA gene microRNA 7008
Cpgi13047 3 31056815 to 31057077 262 CpG island CpG island 13047
Gm33641 3 31061302 to 31066692 5390 + lncRNA gene predicted gene, 33641
Gm33694 3 31062428 to 31079942 17514 - lncRNA gene predicted gene, 33694
Tssr28704 3 31076088 to 31076091 3 + TSS region transcription start site region 28704
Tssr32910 3 31079627 to 31079661 34 - TSS region transcription start site region 32910
Tssr28705 3 31091712 to 31091729 17 + TSS region transcription start site region 28705
Cpgi13048 3 31093706 to 31095952 2246 CpG island CpG island 13048
Tssr28706 3 31093892 to 31093907 15 + TSS region transcription start site region 28706
Tssr28707 3 31094017 to 31094050 33 + TSS region transcription start site region 28707
Tssr28708 3 31094666 to 31094688 22 + TSS region transcription start site region 28708
Tssr28709 3 31094694 to 31094712 18 + TSS region transcription start site region 28709
Tssr28710 3 31094719 to 31094729 10 + TSS region transcription start site region 28710
Tssr28711 3 31094937 to 31094948 11 + TSS region transcription start site region 28711
Tssr28712 3 31094961 to 31094976 15 + TSS region transcription start site region 28712
Tssr28713 3 31095052 to 31095123 71 + TSS region transcription start site region 28713
Skil 3 31095058 to 31122577 27519 + protein coding gene SKI-like
Tssr32911 3 31095827 to 31095844 17 - TSS region transcription start site region 32911
Tssr28714 3 31095897 to 31095932 35 + TSS region transcription start site region 28714
Tssr28715 3 31096374 to 31096378 4 + TSS region transcription start site region 28715
Tssr28716 3 31096840 to 31096854 14 + TSS region transcription start site region 28716
Tssr28717 3 31098271 to 31098288 17 + TSS region transcription start site region 28717
Tssr28718 3 31120030 to 31120051 21 + TSS region transcription start site region 28718
Tssr28719 3 31120450 to 31120463 13 + TSS region transcription start site region 28719
Tssr28720 3 31121404 to 31121423 19 + TSS region transcription start site region 28720
Tssr28721 3 31121697 to 31121701 4 + TSS region transcription start site region 28721
Tssr852 3 31126521 to 31126528 7 + TSS region transcription start site region 852
Cpgi13049 3 31149680 to 31150359 679 CpG island CpG island 13049
Tssr28722 3 31149750 to 31149765 15 + TSS region transcription start site region 28722
Tssr28723 3 31149771 to 31149787 16 + TSS region transcription start site region 28723
Cldn11 3 31149920 to 31164324 14404 + protein coding gene claudin 11
Tssr28724 3 31149934 to 31149958 24 + TSS region transcription start site region 28724
Tssr28725 3 31149964 to 31149979 15 + TSS region transcription start site region 28725
Cpgi13050 3 31158749 to 31158909 160 CpG island CpG island 13050
Cpgi13051 3 31163020 to 31163299 279 CpG island CpG island 13051
Tssr28726 3 31163138 to 31163151 13 + TSS region transcription start site region 28726
Tssr28727 3 31163352 to 31163363 11 + TSS region transcription start site region 28727
Tssr28728 3 31163377 to 31163388 11 + TSS region transcription start site region 28728
Tssr28729 3 31163876 to 31163890 14 + TSS region transcription start site region 28729
Slc7a14 3 31202858 to 31310378 107520 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 14
Tssr32912 3 31208066 to 31208076 10 - TSS region transcription start site region 32912
Cpgi13052 3 31209195 to 31209348 153 CpG island CpG island 13052
Tssr28730 3 31220057 to 31220070 13 + TSS region transcription start site region 28730
Tssr32913 3 31225211 to 31225213 2 - TSS region transcription start site region 32913
Tssr28731 3 31228479 to 31228481 2 + TSS region transcription start site region 28731
Gm33834 3 31232620 to 31237362 4742 + lncRNA gene predicted gene, 33834
D3Mit151 3 31238343 to 31238491 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 151
D3Dcr3 3 31247299 to 31247394 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 3
Gm15496 3 31285587 to 31316891 31304 + antisense lncRNA gene predicted gene 15496
Cpgi13053 3 31309144 to 31310392 1248 CpG island CpG island 13053
Tssr32914 3 31310218 to 31310231 13 - TSS region transcription start site region 32914
Tssr32915 3 31310246 to 31310265 19 - TSS region transcription start site region 32915
Tssr32916 3 31310267 to 31310324 57 - TSS region transcription start site region 32916
Tssr32917 3 31310349 to 31310373 24 - TSS region transcription start site region 32917
Tssr32918 3 31330937 to 31330940 3 - TSS region transcription start site region 32918
Gm38025 3 31341012 to 31345280 4268 + lincRNA gene predicted gene, 38025
Gm6558 3 31644815 to 31687842 43027 - pseudogene predicted gene 6558
Tssr28732 3 31686418 to 31686438 20 + TSS region transcription start site region 28732
Gm33886 3 31686425 to 31692135 5710 + lncRNA gene predicted gene, 33886