Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:30755950-30997192

38 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Samd7	3	30746293 to 30767174	20881	+	protein coding gene	sterile alpha motif domain containing 7
Gm33590	3	30752309 to 30756654	4345	-	lncRNA gene	predicted gene, 33590
Tssr28687	3	30791900 to 30791903	3	+	TSS region	transcription start site region 28687
4933429H19Rik	3	30792570 to 30793564	994	-	antisense lncRNA gene	RIKEN cDNA 4933429H19 gene
Cpgi13043	3	30792754 to 30794089	1335		CpG island	CpG island 13043
Sec62	3	30792875 to 30821263	28388	+	protein coding gene	SEC62 homolog (S. cerevisiae)
Tssr28688	3	30793033 to 30793067	34	+	TSS region	transcription start site region 28688
Tssr28689	3	30793081 to 30793098	17	+	TSS region	transcription start site region 28689
Tssr28690	3	30793128 to 30793147	19	+	TSS region	transcription start site region 28690
Tssr32904	3	30793205 to 30793232	27	-	TSS region	transcription start site region 32904
Tssr28691	3	30793301 to 30793353	52	+	TSS region	transcription start site region 28691
Tssr32905	3	30793549 to 30793595	46	-	TSS region	transcription start site region 32905
Tssr28692	3	30801093 to 30801105	12	+	TSS region	transcription start site region 28692
Tssr28693	3	30801111 to 30801128	17	+	TSS region	transcription start site region 28693
Tssr28694	3	30809817 to 30809860	43	+	TSS region	transcription start site region 28694
D3Dcr1	3	30811631 to 30811726	95		DNA segment	DNA Segment, Chr 3, Derry C. Roopenian 1
Gm38080	3	30828565 to 30828832	267	-	pseudogene	predicted gene, 38080
Gm42198	3	30841537 to 30851993	10456	-	lncRNA gene	predicted gene, 42198
Gm42199	3	30852483 to 30855860	3377	-	lncRNA gene	predicted gene, 42199
Cpgi13044	3	30855572 to 30856561	989		CpG island	CpG island 13044
Tssr28695	3	30855730 to 30855758	28	+	TSS region	transcription start site region 28695
Tssr28696	3	30855946 to 30856002	56	+	TSS region	transcription start site region 28696
Gpr160	3	30855950 to 30897192	41242	+	protein coding gene	G protein-coupled receptor 160
Tssr28697	3	30856004 to 30856007	3	+	TSS region	transcription start site region 28697
Tssr28698	3	30856014 to 30856026	12	+	TSS region	transcription start site region 28698
Tssr28699	3	30864269 to 30864310	41	+	TSS region	transcription start site region 28699
Tssr28700	3	30864313 to 30864324	11	+	TSS region	transcription start site region 28700
Phc3	3	30899371 to 30969415	70044	-	protein coding gene	polyhomeotic 3
Tssr32906	3	30942443 to 30942487	44	-	TSS region	transcription start site region 32906
Tssr32907	3	30950923 to 30950939	16	-	TSS region	transcription start site region 32907
Tssr32908	3	30955219 to 30955243	24	-	TSS region	transcription start site region 32908
9530022L04Rik	3	30957329 to 30957638	309	-	unclassified gene	RIKEN cDNA 9530022L04 gene
Cpgi13045	3	30968547 to 30969674	1127		CpG island	CpG island 13045
Tssr32909	3	30969399 to 30969425	26	-	TSS region	transcription start site region 32909
Gm2979	3	30974649 to 30975111	462	+	pseudogene	predicted gene 2979
Cpgi13046	3	30995356 to 30996365	1009		CpG island	CpG island 13046
Prkci	3	30995742 to 31052740	56998	+	protein coding gene	protein kinase C, iota
Tssr28701	3	30995754 to 30995868	114	+	TSS region	transcription start site region 28701