Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:30043344-30673345

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mecom 3 29951296 to 30509783 558487 - protein coding gene MDS1 and EVI1 complex locus
Mecomos 3 30012379 to 30054808 42429 + antisense lncRNA gene MDS1 and EVI1 complex locus, opposite strand
Tssr32884 3 30048207 to 30048219 12 - TSS region transcription start site region 32884
Tssr32885 3 30048238 to 30048250 12 - TSS region transcription start site region 32885
Cpgi13033 3 30106508 to 30106739 231 CpG island CpG island 13033
Tssr32886 3 30107695 to 30107700 5 - TSS region transcription start site region 32886
Tssr32887 3 30140407 to 30140433 26 - TSS region transcription start site region 32887
Gm38066 3 30160253 to 30161886 1633 - unclassified gene predicted gene, 38066
Tssr32888 3 30190095 to 30190114 19 - TSS region transcription start site region 32888
Tssr32889 3 30190362 to 30190376 14 - TSS region transcription start site region 32889
Tssr32890 3 30211322 to 30211327 5 - TSS region transcription start site region 32890
Tssr32891 3 30220427 to 30220431 4 - TSS region transcription start site region 32891
Gm38197 3 30225573 to 30227694 2121 - unclassified gene predicted gene, 38197
D3Mit271 3 30225831 to 30225935 104 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 271
Cpgi13034 3 30266656 to 30266911 255 CpG island CpG island 13034
Gm10258 3 30267825 to 30269947 2122 - unclassified non-coding RNA gene predicted gene 10258
Gm38362 3 30272322 to 30274385 2063 - unclassified gene predicted gene, 38362
9530010C24Rik 3 30349980 to 30351324 1344 unclassified gene RIKEN cDNA 9530010C24 gene
Tssr32892 3 30358344 to 30358345 1 - TSS region transcription start site region 32892
Tssr32893 3 30386395 to 30386408 13 - TSS region transcription start site region 32893
D3Mit178 3 30393206 to 30393398 192 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 178
Lscc2 3 30393206 to 30393398 192 QTL lung squamous cell carcinoma 2
Mos3 3 30393206 to 50684998 20291792 heritable phenotypic marker modifier of Sox10 3
Gm37024 3 30488426 to 30489293 867 + unclassified gene predicted gene, 37024
Tssr32894 3 30491536 to 30491539 3 - TSS region transcription start site region 32894
Gm37652 3 30501719 to 30503813 2094 - unclassified gene predicted gene, 37652
Cpgi13035 3 30507344 to 30509642 2298 CpG island CpG island 13035
Tssr32895 3 30509462 to 30509509 47 - TSS region transcription start site region 32895
Tssr32896 3 30509681 to 30509746 65 - TSS region transcription start site region 32896
Tssr32897 3 30509752 to 30509794 42 - TSS region transcription start site region 32897
Cpgi13036 3 30514135 to 30515678 1543 CpG island CpG island 13036
D3Mit222 3 30535747 to 30535882 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 222
Gm38258 3 30552697 to 30564243 11546 - lincRNA gene predicted gene, 38258
Gm38153 3 30561658 to 30562129 471 - pseudogene predicted gene, 38153
Cpgi13037 3 30595016 to 30595811 795 CpG island CpG island 13037
1600017P15Rik 3 30595346 to 30595757 411 - unclassified gene RIKEN cDNA 1600017P15 gene
Actrt3 3 30597073 to 30599870 2797 - protein coding gene actin related protein T3
Cpgi13038 3 30599632 to 30599989 357 CpG island CpG island 13038
Tssr32898 3 30599863 to 30599886 23 - TSS region transcription start site region 32898
n-TVaac8 3 30601270 to 30601342 72 + tRNA gene nuclear encoded tRNA valine 8 (anticodon AAC)
Tssr28679 3 30602056 to 30602096 40 + TSS region transcription start site region 28679
Mynn 3 30602087 to 30619873 17786 + protein coding gene myoneurin
Cpgi13039 3 30602219 to 30603116 897 CpG island CpG island 13039
Tssr28680 3 30602617 to 30602653 36 + TSS region transcription start site region 28680
Lrrc34 3 30624267 to 30647818 23551 - protein coding gene leucine rich repeat containing 34
Lrriq4 3 30644507 to 30672431 27924 + protein coding gene leucine-rich repeats and IQ motif containing 4
Cpgi13040 3 30647537 to 30647863 326 CpG island CpG island 13040
Tssr32899 3 30647752 to 30647770 18 - TSS region transcription start site region 32899
Tssr32900 3 30647779 to 30647782 3 - TSS region transcription start site region 32900
Tssr32901 3 30647793 to 30647876 83 - TSS region transcription start site region 32901
Tssr28681 3 30647923 to 30647934 11 + TSS region transcription start site region 28681
Tssr28682 3 30647958 to 30647977 19 + TSS region transcription start site region 28682
Tssr28683 3 30647993 to 30648007 14 + TSS region transcription start site region 28683
Cpgi13041 3 30650106 to 30650991 885 CpG island CpG island 13041