Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:29712875-31901263

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq8 3 24714068 to 31277954 6563886 QTL conditioned fear QTL 8
Tssr28676 3 29732830 to 29732834 4 + TSS region transcription start site region 28676
Gm37557 3 29771284 to 29771422 138 + pseudogene predicted gene, 37557
Gm33206 3 29773466 to 29893177 119711 - lincRNA gene predicted gene, 33206
Tssr28677 3 29891008 to 29891031 23 + TSS region transcription start site region 28677
Mannr 3 29891017 to 29924191 33174 + lincRNA gene Mecom adjacent non-protein coding RNA
Gm37281 3 29926536 to 29926974 438 + pseudogene predicted gene, 37281
Mecom 3 29951296 to 30509783 558487 - protein coding gene MDS1 and EVI1 complex locus
Cpgi13031 3 29996112 to 29996475 363 CpG island CpG island 13031
Tssr28678 3 30012198 to 30012209 11 + TSS region transcription start site region 28678
Cpgi13032 3 30012256 to 30012593 337 CpG island CpG island 13032
Mecomos 3 30012379 to 30054808 42429 + antisense lncRNA gene MDS1 and EVI1 complex locus, opposite strand
Tssr32873 3 30012886 to 30012911 25 - TSS region transcription start site region 32873
Tssr32874 3 30013004 to 30013020 16 - TSS region transcription start site region 32874
Tssr32875 3 30013025 to 30013036 11 - TSS region transcription start site region 32875
Tssr32876 3 30013136 to 30013149 13 - TSS region transcription start site region 32876
Tssr32877 3 30013157 to 30013174 17 - TSS region transcription start site region 32877
Tssr32878 3 30013232 to 30013246 14 - TSS region transcription start site region 32878
Tssr32879 3 30013247 to 30013260 13 - TSS region transcription start site region 32879
Tssr32880 3 30013327 to 30013340 13 - TSS region transcription start site region 32880
D3Mit46.3 3 30013333 to 30013475 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46.3
Tssr32881 3 30013349 to 30013369 20 - TSS region transcription start site region 32881
Tssr32882 3 30013388 to 30013399 11 - TSS region transcription start site region 32882
D3Mit46 3 30013439 to 30013604 165 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46
D3Mit46.1 3 30013610 to 30013725 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46.1
Tssr32883 3 30014387 to 30014390 3 - TSS region transcription start site region 32883
Tssr32884 3 30048207 to 30048219 12 - TSS region transcription start site region 32884
Tssr32885 3 30048238 to 30048250 12 - TSS region transcription start site region 32885
Cpgi13033 3 30106508 to 30106739 231 CpG island CpG island 13033
Tssr32886 3 30107695 to 30107700 5 - TSS region transcription start site region 32886
Tssr32887 3 30140407 to 30140433 26 - TSS region transcription start site region 32887
Gm38066 3 30160253 to 30161886 1633 - unclassified gene predicted gene, 38066
Tssr32888 3 30190095 to 30190114 19 - TSS region transcription start site region 32888
Tssr32889 3 30190362 to 30190376 14 - TSS region transcription start site region 32889
Tssr32890 3 30211322 to 30211327 5 - TSS region transcription start site region 32890
Tssr32891 3 30220427 to 30220431 4 - TSS region transcription start site region 32891
Gm38197 3 30225573 to 30227694 2121 - unclassified gene predicted gene, 38197
D3Mit271 3 30225831 to 30225935 104 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 271
Cpgi13034 3 30266656 to 30266911 255 CpG island CpG island 13034
Gm10258 3 30267825 to 30269947 2122 - unclassified non-coding RNA gene predicted gene 10258
Gm38362 3 30272322 to 30274385 2063 - unclassified gene predicted gene, 38362
9530010C24Rik 3 30349980 to 30351324 1344 unclassified gene RIKEN cDNA 9530010C24 gene
Tssr32892 3 30358344 to 30358345 1 - TSS region transcription start site region 32892
Tssr32893 3 30386395 to 30386408 13 - TSS region transcription start site region 32893
D3Mit178 3 30393206 to 30393398 192 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 178
Lscc2 3 30393206 to 30393398 192 QTL lung squamous cell carcinoma 2
Mos3 3 30393206 to 50684998 20291792 heritable phenotypic marker modifier of Sox10 3
Gm37024 3 30488426 to 30489293 867 + unclassified gene predicted gene, 37024
Tssr32894 3 30491536 to 30491539 3 - TSS region transcription start site region 32894
Gm37652 3 30501719 to 30503813 2094 - unclassified gene predicted gene, 37652
Cpgi13035 3 30507344 to 30509642 2298 CpG island CpG island 13035
Tssr32895 3 30509462 to 30509509 47 - TSS region transcription start site region 32895
Tssr32896 3 30509681 to 30509746 65 - TSS region transcription start site region 32896
Tssr32897 3 30509752 to 30509794 42 - TSS region transcription start site region 32897
Cpgi13036 3 30514135 to 30515678 1543 CpG island CpG island 13036
D3Mit222 3 30535747 to 30535882 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 222
Gm38258 3 30552697 to 30564243 11546 - lincRNA gene predicted gene, 38258
Gm38153 3 30561658 to 30562129 471 - pseudogene predicted gene, 38153
Cpgi13037 3 30595016 to 30595811 795 CpG island CpG island 13037
1600017P15Rik 3 30595346 to 30595757 411 - unclassified gene RIKEN cDNA 1600017P15 gene
Actrt3 3 30597073 to 30599870 2797 - protein coding gene actin related protein T3
Cpgi13038 3 30599632 to 30599989 357 CpG island CpG island 13038
Tssr32898 3 30599863 to 30599886 23 - TSS region transcription start site region 32898
n-TVaac8 3 30601270 to 30601342 72 + tRNA gene nuclear encoded tRNA valine 8 (anticodon AAC)
Tssr28679 3 30602056 to 30602096 40 + TSS region transcription start site region 28679
Mynn 3 30602087 to 30619873 17786 + protein coding gene myoneurin
Cpgi13039 3 30602219 to 30603116 897 CpG island CpG island 13039
Tssr28680 3 30602617 to 30602653 36 + TSS region transcription start site region 28680
Lrrc34 3 30624267 to 30647818 23551 - protein coding gene leucine rich repeat containing 34
Lrriq4 3 30644507 to 30672431 27924 + protein coding gene leucine-rich repeats and IQ motif containing 4
Cpgi13040 3 30647537 to 30647863 326 CpG island CpG island 13040
Tssr32899 3 30647752 to 30647770 18 - TSS region transcription start site region 32899
Tssr32900 3 30647779 to 30647782 3 - TSS region transcription start site region 32900
Tssr32901 3 30647793 to 30647876 83 - TSS region transcription start site region 32901
Tssr28681 3 30647923 to 30647934 11 + TSS region transcription start site region 28681
Tssr28682 3 30647958 to 30647977 19 + TSS region transcription start site region 28682
Tssr28683 3 30647993 to 30648007 14 + TSS region transcription start site region 28683
Cpgi13041 3 30650106 to 30650991 885 CpG island CpG island 13041
Lrrc31 3 30679058 to 30699843 20785 - protein coding gene leucine rich repeat containing 31
Gm15462 3 30686085 to 30692366 6281 + antisense lncRNA gene predicted gene 15462
Tssr32902 3 30699765 to 30699803 38 - TSS region transcription start site region 32902
Tssr32903 3 30699855 to 30699872 17 - TSS region transcription start site region 32903
Cpgi13042 3 30701363 to 30701729 366 CpG island CpG island 13042
Tssr28684 3 30732349 to 30732351 2 + TSS region transcription start site region 28684
Tssr28685 3 30746210 to 30746235 25 + TSS region transcription start site region 28685
Samd7 3 30746293 to 30767174 20881 + protein coding gene sterile alpha motif domain containing 7
Tssr28686 3 30746325 to 30746341 16 + TSS region transcription start site region 28686
Gm33590 3 30752309 to 30756654 4345 - lncRNA gene predicted gene, 33590
Tssr28687 3 30791900 to 30791903 3 + TSS region transcription start site region 28687
4933429H19Rik 3 30792570 to 30793564 994 - antisense lncRNA gene RIKEN cDNA 4933429H19 gene
Cpgi13043 3 30792754 to 30794089 1335 CpG island CpG island 13043
Sec62 3 30792875 to 30821263 28388 + protein coding gene SEC62 homolog (S. cerevisiae)
Tssr28688 3 30793033 to 30793067 34 + TSS region transcription start site region 28688
Tssr28689 3 30793081 to 30793098 17 + TSS region transcription start site region 28689
Tssr28690 3 30793128 to 30793147 19 + TSS region transcription start site region 28690
Tssr32904 3 30793205 to 30793232 27 - TSS region transcription start site region 32904
Tssr28691 3 30793301 to 30793353 52 + TSS region transcription start site region 28691
Tssr32905 3 30793549 to 30793595 46 - TSS region transcription start site region 32905
Tssr28692 3 30801093 to 30801105 12 + TSS region transcription start site region 28692
Tssr28693 3 30801111 to 30801128 17 + TSS region transcription start site region 28693
Tssr28694 3 30809817 to 30809860 43 + TSS region transcription start site region 28694
D3Dcr1 3 30811631 to 30811726 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 1
Gm38080 3 30828565 to 30828832 267 - pseudogene predicted gene, 38080
Gm42198 3 30841537 to 30851993 10456 - lncRNA gene predicted gene, 42198
Gm42199 3 30852483 to 30855860 3377 - lncRNA gene predicted gene, 42199
Cpgi13044 3 30855572 to 30856561 989 CpG island CpG island 13044
Tssr28695 3 30855730 to 30855758 28 + TSS region transcription start site region 28695
Tssr28696 3 30855946 to 30856002 56 + TSS region transcription start site region 28696
Gpr160 3 30855950 to 30897192 41242 + protein coding gene G protein-coupled receptor 160
Tssr28697 3 30856004 to 30856007 3 + TSS region transcription start site region 28697
Tssr28698 3 30856014 to 30856026 12 + TSS region transcription start site region 28698
Tssr28699 3 30864269 to 30864310 41 + TSS region transcription start site region 28699
Tssr28700 3 30864313 to 30864324 11 + TSS region transcription start site region 28700
Phc3 3 30899371 to 30969415 70044 - protein coding gene polyhomeotic 3
Tssr32906 3 30942443 to 30942487 44 - TSS region transcription start site region 32906
Tssr32907 3 30950923 to 30950939 16 - TSS region transcription start site region 32907
Tssr32908 3 30955219 to 30955243 24 - TSS region transcription start site region 32908
9530022L04Rik 3 30957329 to 30957638 309 - unclassified gene RIKEN cDNA 9530022L04 gene
Cpgi13045 3 30968547 to 30969674 1127 CpG island CpG island 13045
Tssr32909 3 30969399 to 30969425 26 - TSS region transcription start site region 32909
Gm2979 3 30974649 to 30975111 462 + pseudogene predicted gene 2979
Cpgi13046 3 30995356 to 30996365 1009 CpG island CpG island 13046
Prkci 3 30995742 to 31052740 56998 + protein coding gene protein kinase C, iota
Tssr28701 3 30995754 to 30995868 114 + TSS region transcription start site region 28701
D3Dcr2 3 31010839 to 31010945 106 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 2
Tssr28702 3 31017895 to 31017918 23 + TSS region transcription start site region 28702
Tssr28703 3 31038950 to 31038966 16 + TSS region transcription start site region 28703
Mir7008 3 31038966 to 31039028 62 + miRNA gene microRNA 7008
Cpgi13047 3 31056815 to 31057077 262 CpG island CpG island 13047
Gm33641 3 31061302 to 31066692 5390 + lncRNA gene predicted gene, 33641
Gm33694 3 31062428 to 31079942 17514 - lncRNA gene predicted gene, 33694
Tssr28704 3 31076088 to 31076091 3 + TSS region transcription start site region 28704
Tssr32910 3 31079627 to 31079661 34 - TSS region transcription start site region 32910
Tssr28705 3 31091712 to 31091729 17 + TSS region transcription start site region 28705
Cpgi13048 3 31093706 to 31095952 2246 CpG island CpG island 13048
Tssr28706 3 31093892 to 31093907 15 + TSS region transcription start site region 28706
Tssr28707 3 31094017 to 31094050 33 + TSS region transcription start site region 28707
Tssr28708 3 31094666 to 31094688 22 + TSS region transcription start site region 28708
Tssr28709 3 31094694 to 31094712 18 + TSS region transcription start site region 28709
Tssr28710 3 31094719 to 31094729 10 + TSS region transcription start site region 28710
Tssr28711 3 31094937 to 31094948 11 + TSS region transcription start site region 28711
Tssr28712 3 31094961 to 31094976 15 + TSS region transcription start site region 28712
Tssr28713 3 31095052 to 31095123 71 + TSS region transcription start site region 28713
Skil 3 31095058 to 31122577 27519 + protein coding gene SKI-like
Tssr32911 3 31095827 to 31095844 17 - TSS region transcription start site region 32911
Tssr28714 3 31095897 to 31095932 35 + TSS region transcription start site region 28714
Tssr28715 3 31096374 to 31096378 4 + TSS region transcription start site region 28715
Tssr28716 3 31096840 to 31096854 14 + TSS region transcription start site region 28716
Tssr28717 3 31098271 to 31098288 17 + TSS region transcription start site region 28717
Tssr28718 3 31120030 to 31120051 21 + TSS region transcription start site region 28718
Tssr28719 3 31120450 to 31120463 13 + TSS region transcription start site region 28719
Tssr28720 3 31121404 to 31121423 19 + TSS region transcription start site region 28720
Tssr28721 3 31121697 to 31121701 4 + TSS region transcription start site region 28721
Tssr852 3 31126521 to 31126528 7 + TSS region transcription start site region 852
Cpgi13049 3 31149680 to 31150359 679 CpG island CpG island 13049
Tssr28722 3 31149750 to 31149765 15 + TSS region transcription start site region 28722
Tssr28723 3 31149771 to 31149787 16 + TSS region transcription start site region 28723
Cldn11 3 31149920 to 31164324 14404 + protein coding gene claudin 11
Tssr28724 3 31149934 to 31149958 24 + TSS region transcription start site region 28724
Tssr28725 3 31149964 to 31149979 15 + TSS region transcription start site region 28725
Cpgi13050 3 31158749 to 31158909 160 CpG island CpG island 13050
Cpgi13051 3 31163020 to 31163299 279 CpG island CpG island 13051
Tssr28726 3 31163138 to 31163151 13 + TSS region transcription start site region 28726
Tssr28727 3 31163352 to 31163363 11 + TSS region transcription start site region 28727
Tssr28728 3 31163377 to 31163388 11 + TSS region transcription start site region 28728
Tssr28729 3 31163876 to 31163890 14 + TSS region transcription start site region 28729
Slc7a14 3 31202858 to 31310378 107520 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 14
Tssr32912 3 31208066 to 31208076 10 - TSS region transcription start site region 32912
Cpgi13052 3 31209195 to 31209348 153 CpG island CpG island 13052
Tssr28730 3 31220057 to 31220070 13 + TSS region transcription start site region 28730
Tssr32913 3 31225211 to 31225213 2 - TSS region transcription start site region 32913
Tssr28731 3 31228479 to 31228481 2 + TSS region transcription start site region 28731
Gm33834 3 31232620 to 31237362 4742 + lncRNA gene predicted gene, 33834
D3Mit151 3 31238343 to 31238491 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 151
D3Dcr3 3 31247299 to 31247394 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 3
Gm15496 3 31285587 to 31316891 31304 + antisense lncRNA gene predicted gene 15496
Cpgi13053 3 31309144 to 31310392 1248 CpG island CpG island 13053
Tssr32914 3 31310218 to 31310231 13 - TSS region transcription start site region 32914
Tssr32915 3 31310246 to 31310265 19 - TSS region transcription start site region 32915
Tssr32916 3 31310267 to 31310324 57 - TSS region transcription start site region 32916
Tssr32917 3 31310349 to 31310373 24 - TSS region transcription start site region 32917
Tssr32918 3 31330937 to 31330940 3 - TSS region transcription start site region 32918
Gm38025 3 31341012 to 31345280 4268 + lincRNA gene predicted gene, 38025
Gm6558 3 31644815 to 31687842 43027 - pseudogene predicted gene 6558
Tssr28732 3 31686418 to 31686438 20 + TSS region transcription start site region 28732
Gm33886 3 31686425 to 31692135 5710 + lncRNA gene predicted gene, 33886
Tssr32919 3 31690584 to 31690592 8 - TSS region transcription start site region 32919
Tssr853 3 31813206 to 31813209 3 + TSS region transcription start site region 853
Gm34031 3 31898827 to 31902118 3291 - lncRNA gene predicted gene, 34031
Orgwq4 3 147599053 to 30013439 -117585614 QTL organ weight QTL 4