Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:28812513-30546560

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33051 3 28810187 to 28816183 5996 - antisense lncRNA gene predicted gene, 33051
Tssr32870 3 28816243 to 28816254 11 - TSS region transcription start site region 32870
Tssr32871 3 28816264 to 28816275 11 - TSS region transcription start site region 32871
D3Mit369 3 28834409 to 28834519 110 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-369
Gm37867 3 28852033 to 28854257 2224 - lincRNA gene predicted gene, 37867
Gm37924 3 28879812 to 28883458 3646 + unclassified gene predicted gene, 37924
Gm33102 3 28883456 to 28897284 13828 - lncRNA gene predicted gene, 33102
Gm1527 3 28892617 to 28926724 34107 + protein coding gene predicted gene 1527
Tssr28662 3 28892617 to 28892619 2 + TSS region transcription start site region 28662
Tssr28663 3 28893723 to 28893727 4 + TSS region transcription start site region 28663
Tssr32872 3 28897157 to 28897171 14 - TSS region transcription start site region 32872
Tssr850 3 28956371 to 28956378 7 + TSS region transcription start site region 850
Tssr28664 3 28986639 to 28986642 3 + TSS region transcription start site region 28664
Gm33154 3 29043768 to 29045547 1779 - lncRNA gene predicted gene, 33154
D3Mit93 3 29063468 to 29063630 162 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 93
Egfem1 3 29082023 to 29691209 609186 + protein coding gene EGF-like and EMI domain containing 1
Cpgi13030 3 29082253 to 29083130 877 CpG island CpG island 13030
Tssr28665 3 29082539 to 29082590 51 + TSS region transcription start site region 28665
D3Mit118 3 29083300 to 29083442 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 118
Tssr28666 3 29109801 to 29109807 6 + TSS region transcription start site region 28666
Tssr28667 3 29154218 to 29154226 8 + TSS region transcription start site region 28667
Gm38029 3 29174838 to 29176927 2089 + unclassified gene predicted gene, 38029
Tssr28668 3 29198768 to 29198770 2 + TSS region transcription start site region 28668
D230021J17Rik 3 29209341 to 29211977 2636 unclassified gene RIKEN cDNA D230021J17 gene
Gm37965 3 29219887 to 29221248 1361 + unclassified gene predicted gene, 37965
Tssr28669 3 29235927 to 29235931 4 + TSS region transcription start site region 28669
Tssr28670 3 29240422 to 29240425 3 + TSS region transcription start site region 28670
Tssr28671 3 29260999 to 29261003 4 + TSS region transcription start site region 28671
AA516838 3 29266280 to 29266842 562 unclassified gene expressed sequence AA516838
Tssr851 3 29268526 to 29268529 3 + TSS region transcription start site region 851
Tssr28672 3 29314725 to 29314734 9 + TSS region transcription start site region 28672
Tssr28673 3 29377856 to 29377860 4 + TSS region transcription start site region 28673
Mir551b 3 29416823 to 29416920 97 + miRNA gene microRNA 551b
Tssr28674 3 29467899 to 29467904 5 + TSS region transcription start site region 28674
Tssr28675 3 29541893 to 29541895 2 + TSS region transcription start site region 28675
Mir21b 3 29636744 to 29636851 107 + miRNA gene microRNA 21b
Gm42197 3 29662513 to 29696560 34047 - lncRNA gene predicted gene, 42197
Tssr28676 3 29732830 to 29732834 4 + TSS region transcription start site region 28676
Gm37557 3 29771284 to 29771422 138 + pseudogene predicted gene, 37557
Gm33206 3 29773466 to 29893177 119711 - lincRNA gene predicted gene, 33206
Tssr28677 3 29891008 to 29891031 23 + TSS region transcription start site region 28677
Mannr 3 29891017 to 29924191 33174 + lincRNA gene Mecom adjacent non-protein coding RNA
Gm37281 3 29926536 to 29926974 438 + pseudogene predicted gene, 37281
Mecom 3 29951296 to 30509783 558487 - protein coding gene MDS1 and EVI1 complex locus
Cpgi13031 3 29996112 to 29996475 363 CpG island CpG island 13031
Tssr28678 3 30012198 to 30012209 11 + TSS region transcription start site region 28678
Cpgi13032 3 30012256 to 30012593 337 CpG island CpG island 13032
Mecomos 3 30012379 to 30054808 42429 + antisense lncRNA gene MDS1 and EVI1 complex locus, opposite strand
Tssr32873 3 30012886 to 30012911 25 - TSS region transcription start site region 32873
Tssr32874 3 30013004 to 30013020 16 - TSS region transcription start site region 32874
Tssr32875 3 30013025 to 30013036 11 - TSS region transcription start site region 32875
Tssr32876 3 30013136 to 30013149 13 - TSS region transcription start site region 32876
Tssr32877 3 30013157 to 30013174 17 - TSS region transcription start site region 32877
Tssr32878 3 30013232 to 30013246 14 - TSS region transcription start site region 32878
Tssr32879 3 30013247 to 30013260 13 - TSS region transcription start site region 32879
Tssr32880 3 30013327 to 30013340 13 - TSS region transcription start site region 32880
D3Mit46.3 3 30013333 to 30013475 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46.3
Tssr32881 3 30013349 to 30013369 20 - TSS region transcription start site region 32881
Tssr32882 3 30013388 to 30013399 11 - TSS region transcription start site region 32882
D3Mit46 3 30013439 to 30013604 165 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46
D3Mit46.1 3 30013610 to 30013725 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46.1
Tssr32883 3 30014387 to 30014390 3 - TSS region transcription start site region 32883
Tssr32884 3 30048207 to 30048219 12 - TSS region transcription start site region 32884
Tssr32885 3 30048238 to 30048250 12 - TSS region transcription start site region 32885
Cpgi13033 3 30106508 to 30106739 231 CpG island CpG island 13033
Tssr32886 3 30107695 to 30107700 5 - TSS region transcription start site region 32886
Tssr32887 3 30140407 to 30140433 26 - TSS region transcription start site region 32887
Gm38066 3 30160253 to 30161886 1633 - unclassified gene predicted gene, 38066
Tssr32888 3 30190095 to 30190114 19 - TSS region transcription start site region 32888
Tssr32889 3 30190362 to 30190376 14 - TSS region transcription start site region 32889
Tssr32890 3 30211322 to 30211327 5 - TSS region transcription start site region 32890
Tssr32891 3 30220427 to 30220431 4 - TSS region transcription start site region 32891
Gm38197 3 30225573 to 30227694 2121 - unclassified gene predicted gene, 38197
D3Mit271 3 30225831 to 30225935 104 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 271
Cpgi13034 3 30266656 to 30266911 255 CpG island CpG island 13034
Gm10258 3 30267825 to 30269947 2122 - unclassified non-coding RNA gene predicted gene 10258
Gm38362 3 30272322 to 30274385 2063 - unclassified gene predicted gene, 38362
9530010C24Rik 3 30349980 to 30351324 1344 unclassified gene RIKEN cDNA 9530010C24 gene
Tssr32892 3 30358344 to 30358345 1 - TSS region transcription start site region 32892
Tssr32893 3 30386395 to 30386408 13 - TSS region transcription start site region 32893
Lscc2 3 30393206 to 30393398 192 QTL lung squamous cell carcinoma 2
D3Mit178 3 30393206 to 30393398 192 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 178
Mos3 3 30393206 to 50684998 20291792 heritable phenotypic marker modifier of Sox10 3
Gm37024 3 30488426 to 30489293 867 + unclassified gene predicted gene, 37024
Tssr32894 3 30491536 to 30491539 3 - TSS region transcription start site region 32894
Gm37652 3 30501719 to 30503813 2094 - unclassified gene predicted gene, 37652
Cpgi13035 3 30507344 to 30509642 2298 CpG island CpG island 13035
Tssr32895 3 30509462 to 30509509 47 - TSS region transcription start site region 32895
Tssr32896 3 30509681 to 30509746 65 - TSS region transcription start site region 32896
Tssr32897 3 30509752 to 30509794 42 - TSS region transcription start site region 32897
Cpgi13036 3 30514135 to 30515678 1543 CpG island CpG island 13036
D3Mit222 3 30535747 to 30535882 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 222
Orgwq4 3 147599053 to 30013439 -117585614 QTL organ weight QTL 4