Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:28668344-32048345

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262 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq8 3 24714068 to 31277954 6563886 QTL conditioned fear QTL 8
Tnik 3 28263214 to 28672457 409243 + protein coding gene TRAF2 and NCK interacting kinase
Cpgi13027 3 28691355 to 28691521 166 CpG island CpG island 13027
Tssr28652 3 28695706 to 28695741 35 + TSS region transcription start site region 28652
Tssr28653 3 28697901 to 28697912 11 + TSS region transcription start site region 28653
Slc2a2 3 28697903 to 28728361 30458 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 2
Tssr28654 3 28697946 to 28697980 34 + TSS region transcription start site region 28654
D3Mit268 3 28718080 to 28718182 102 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 268
Tssr28655 3 28721506 to 28721547 41 + TSS region transcription start site region 28655
Tssr28656 3 28727966 to 28728016 50 + TSS region transcription start site region 28656
Tssr28657 3 28728829 to 28728841 12 + TSS region transcription start site region 28657
Tssr28658 3 28729087 to 28729098 11 + TSS region transcription start site region 28658
1700112D23Rik 3 28738778 to 28772746 33968 - antisense lncRNA gene RIKEN cDNA 1700112D23 gene
Gm6505 3 28764713 to 28765360 647 - pseudogene predicted pseudogene 6505
Tssr32867 3 28765366 to 28765389 23 - TSS region transcription start site region 32867
Cpgi13028 3 28780828 to 28782022 1194 CpG island CpG island 13028
Tssr32868 3 28781103 to 28781130 27 - TSS region transcription start site region 32868
Eif5a2 3 28781276 to 28798846 17570 + protein coding gene eukaryotic translation initiation factor 5A2
Tssr28659 3 28781305 to 28781344 39 + TSS region transcription start site region 28659
Tssr28660 3 28781345 to 28781374 29 + TSS region transcription start site region 28660
Gm32950 3 28802804 to 28805336 2532 - lincRNA gene predicted gene, 32950
Cpgi13029 3 28805203 to 28806043 840 CpG island CpG island 13029
Tssr32869 3 28805328 to 28805360 32 - TSS region transcription start site region 32869
Rpl22l1 3 28805444 to 28807424 1980 + protein coding gene ribosomal protein L22 like 1
Tssr28661 3 28805498 to 28805521 23 + TSS region transcription start site region 28661
Gm33051 3 28810187 to 28816183 5996 - antisense lncRNA gene predicted gene, 33051
Tssr32870 3 28816243 to 28816254 11 - TSS region transcription start site region 32870
Tssr32871 3 28816264 to 28816275 11 - TSS region transcription start site region 32871
D3Mit369 3 28834409 to 28834519 110 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-369
Gm37867 3 28852033 to 28854257 2224 - lincRNA gene predicted gene, 37867
Gm37924 3 28879812 to 28883458 3646 + unclassified gene predicted gene, 37924
Gm33102 3 28883456 to 28897284 13828 - lncRNA gene predicted gene, 33102
Tssr28662 3 28892617 to 28892619 2 + TSS region transcription start site region 28662
Gm1527 3 28892617 to 28926724 34107 + protein coding gene predicted gene 1527
Tssr28663 3 28893723 to 28893727 4 + TSS region transcription start site region 28663
Tssr32872 3 28897157 to 28897171 14 - TSS region transcription start site region 32872
Tssr850 3 28956371 to 28956378 7 + TSS region transcription start site region 850
Tssr28664 3 28986639 to 28986642 3 + TSS region transcription start site region 28664
Gm33154 3 29043768 to 29045547 1779 - lncRNA gene predicted gene, 33154
D3Mit93 3 29063468 to 29063630 162 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 93
Egfem1 3 29082023 to 29691209 609186 + protein coding gene EGF-like and EMI domain containing 1
Cpgi13030 3 29082253 to 29083130 877 CpG island CpG island 13030
Tssr28665 3 29082539 to 29082590 51 + TSS region transcription start site region 28665
D3Mit118 3 29083300 to 29083442 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 118
Tssr28666 3 29109801 to 29109807 6 + TSS region transcription start site region 28666
Tssr28667 3 29154218 to 29154226 8 + TSS region transcription start site region 28667
Gm38029 3 29174838 to 29176927 2089 + unclassified gene predicted gene, 38029
Tssr28668 3 29198768 to 29198770 2 + TSS region transcription start site region 28668
D230021J17Rik 3 29209341 to 29211977 2636 unclassified gene RIKEN cDNA D230021J17 gene
Gm37965 3 29219887 to 29221248 1361 + unclassified gene predicted gene, 37965
Tssr28669 3 29235927 to 29235931 4 + TSS region transcription start site region 28669
Tssr28670 3 29240422 to 29240425 3 + TSS region transcription start site region 28670
Tssr28671 3 29260999 to 29261003 4 + TSS region transcription start site region 28671
AA516838 3 29266280 to 29266842 562 unclassified gene expressed sequence AA516838
Tssr851 3 29268526 to 29268529 3 + TSS region transcription start site region 851
Tssr28672 3 29314725 to 29314734 9 + TSS region transcription start site region 28672
Tssr28673 3 29377856 to 29377860 4 + TSS region transcription start site region 28673
Mir551b 3 29416823 to 29416920 97 + miRNA gene microRNA 551b
Tssr28674 3 29467899 to 29467904 5 + TSS region transcription start site region 28674
Tssr28675 3 29541893 to 29541895 2 + TSS region transcription start site region 28675
Mir21b 3 29636744 to 29636851 107 + miRNA gene microRNA 21b
Gm42197 3 29662513 to 29696560 34047 - lncRNA gene predicted gene, 42197
Tssr28676 3 29732830 to 29732834 4 + TSS region transcription start site region 28676
Gm37557 3 29771284 to 29771422 138 + pseudogene predicted gene, 37557
Gm33206 3 29773466 to 29893177 119711 - lincRNA gene predicted gene, 33206
Tssr28677 3 29891008 to 29891031 23 + TSS region transcription start site region 28677
Mannr 3 29891017 to 29924191 33174 + lincRNA gene Mecom adjacent non-protein coding RNA
Gm37281 3 29926536 to 29926974 438 + pseudogene predicted gene, 37281
Mecom 3 29951296 to 30509783 558487 - protein coding gene MDS1 and EVI1 complex locus
Cpgi13031 3 29996112 to 29996475 363 CpG island CpG island 13031
Tssr28678 3 30012198 to 30012209 11 + TSS region transcription start site region 28678
Cpgi13032 3 30012256 to 30012593 337 CpG island CpG island 13032
Mecomos 3 30012379 to 30054808 42429 + antisense lncRNA gene MDS1 and EVI1 complex locus, opposite strand
Tssr32873 3 30012886 to 30012911 25 - TSS region transcription start site region 32873
Tssr32874 3 30013004 to 30013020 16 - TSS region transcription start site region 32874
Tssr32875 3 30013025 to 30013036 11 - TSS region transcription start site region 32875
Tssr32876 3 30013136 to 30013149 13 - TSS region transcription start site region 32876
Tssr32877 3 30013157 to 30013174 17 - TSS region transcription start site region 32877
Tssr32878 3 30013232 to 30013246 14 - TSS region transcription start site region 32878
Tssr32879 3 30013247 to 30013260 13 - TSS region transcription start site region 32879
Tssr32880 3 30013327 to 30013340 13 - TSS region transcription start site region 32880
D3Mit46.3 3 30013333 to 30013475 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46.3
Tssr32881 3 30013349 to 30013369 20 - TSS region transcription start site region 32881
Tssr32882 3 30013388 to 30013399 11 - TSS region transcription start site region 32882
D3Mit46 3 30013439 to 30013604 165 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46
D3Mit46.1 3 30013610 to 30013725 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 46.1
Tssr32883 3 30014387 to 30014390 3 - TSS region transcription start site region 32883
Tssr32884 3 30048207 to 30048219 12 - TSS region transcription start site region 32884
Tssr32885 3 30048238 to 30048250 12 - TSS region transcription start site region 32885
Cpgi13033 3 30106508 to 30106739 231 CpG island CpG island 13033
Tssr32886 3 30107695 to 30107700 5 - TSS region transcription start site region 32886
Tssr32887 3 30140407 to 30140433 26 - TSS region transcription start site region 32887
Gm38066 3 30160253 to 30161886 1633 - unclassified gene predicted gene, 38066
Tssr32888 3 30190095 to 30190114 19 - TSS region transcription start site region 32888
Tssr32889 3 30190362 to 30190376 14 - TSS region transcription start site region 32889
Tssr32890 3 30211322 to 30211327 5 - TSS region transcription start site region 32890
Tssr32891 3 30220427 to 30220431 4 - TSS region transcription start site region 32891
Gm38197 3 30225573 to 30227694 2121 - unclassified gene predicted gene, 38197
D3Mit271 3 30225831 to 30225935 104 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 271
Cpgi13034 3 30266656 to 30266911 255 CpG island CpG island 13034
Gm10258 3 30267825 to 30269947 2122 - unclassified non-coding RNA gene predicted gene 10258
Gm38362 3 30272322 to 30274385 2063 - unclassified gene predicted gene, 38362
9530010C24Rik 3 30349980 to 30351324 1344 unclassified gene RIKEN cDNA 9530010C24 gene
Tssr32892 3 30358344 to 30358345 1 - TSS region transcription start site region 32892
Tssr32893 3 30386395 to 30386408 13 - TSS region transcription start site region 32893
Lscc2 3 30393206 to 30393398 192 QTL lung squamous cell carcinoma 2
Mos3 3 30393206 to 50684998 20291792 heritable phenotypic marker modifier of Sox10 3
D3Mit178 3 30393206 to 30393398 192 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 178
Gm37024 3 30488426 to 30489293 867 + unclassified gene predicted gene, 37024
Tssr32894 3 30491536 to 30491539 3 - TSS region transcription start site region 32894
Gm37652 3 30501719 to 30503813 2094 - unclassified gene predicted gene, 37652
Cpgi13035 3 30507344 to 30509642 2298 CpG island CpG island 13035
Tssr32895 3 30509462 to 30509509 47 - TSS region transcription start site region 32895
Tssr32896 3 30509681 to 30509746 65 - TSS region transcription start site region 32896
Tssr32897 3 30509752 to 30509794 42 - TSS region transcription start site region 32897
Cpgi13036 3 30514135 to 30515678 1543 CpG island CpG island 13036
D3Mit222 3 30535747 to 30535882 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 222
Gm38258 3 30552697 to 30564243 11546 - lincRNA gene predicted gene, 38258
Gm38153 3 30561658 to 30562129 471 - pseudogene predicted gene, 38153
Cpgi13037 3 30595016 to 30595811 795 CpG island CpG island 13037
1600017P15Rik 3 30595346 to 30595757 411 - unclassified gene RIKEN cDNA 1600017P15 gene
Actrt3 3 30597073 to 30599870 2797 - protein coding gene actin related protein T3
Cpgi13038 3 30599632 to 30599989 357 CpG island CpG island 13038
Tssr32898 3 30599863 to 30599886 23 - TSS region transcription start site region 32898
n-TVaac8 3 30601270 to 30601342 72 + tRNA gene nuclear encoded tRNA valine 8 (anticodon AAC)
Tssr28679 3 30602056 to 30602096 40 + TSS region transcription start site region 28679
Mynn 3 30602087 to 30619873 17786 + protein coding gene myoneurin
Cpgi13039 3 30602219 to 30603116 897 CpG island CpG island 13039
Tssr28680 3 30602617 to 30602653 36 + TSS region transcription start site region 28680
Lrrc34 3 30624267 to 30647818 23551 - protein coding gene leucine rich repeat containing 34
Lrriq4 3 30644507 to 30672431 27924 + protein coding gene leucine-rich repeats and IQ motif containing 4
Cpgi13040 3 30647537 to 30647863 326 CpG island CpG island 13040
Tssr32899 3 30647752 to 30647770 18 - TSS region transcription start site region 32899
Tssr32900 3 30647779 to 30647782 3 - TSS region transcription start site region 32900
Tssr32901 3 30647793 to 30647876 83 - TSS region transcription start site region 32901
Tssr28681 3 30647923 to 30647934 11 + TSS region transcription start site region 28681
Tssr28682 3 30647958 to 30647977 19 + TSS region transcription start site region 28682
Tssr28683 3 30647993 to 30648007 14 + TSS region transcription start site region 28683
Cpgi13041 3 30650106 to 30650991 885 CpG island CpG island 13041
Lrrc31 3 30679058 to 30699843 20785 - protein coding gene leucine rich repeat containing 31
Gm15462 3 30686085 to 30692366 6281 + antisense lncRNA gene predicted gene 15462
Tssr32902 3 30699765 to 30699803 38 - TSS region transcription start site region 32902
Tssr32903 3 30699855 to 30699872 17 - TSS region transcription start site region 32903
Cpgi13042 3 30701363 to 30701729 366 CpG island CpG island 13042
Tssr28684 3 30732349 to 30732351 2 + TSS region transcription start site region 28684
Tssr28685 3 30746210 to 30746235 25 + TSS region transcription start site region 28685
Samd7 3 30746293 to 30767174 20881 + protein coding gene sterile alpha motif domain containing 7
Tssr28686 3 30746325 to 30746341 16 + TSS region transcription start site region 28686
Gm33590 3 30752309 to 30756654 4345 - lncRNA gene predicted gene, 33590
Tssr28687 3 30791900 to 30791903 3 + TSS region transcription start site region 28687
4933429H19Rik 3 30792570 to 30793564 994 - antisense lncRNA gene RIKEN cDNA 4933429H19 gene
Cpgi13043 3 30792754 to 30794089 1335 CpG island CpG island 13043
Sec62 3 30792875 to 30821263 28388 + protein coding gene SEC62 homolog (S. cerevisiae)
Tssr28688 3 30793033 to 30793067 34 + TSS region transcription start site region 28688
Tssr28689 3 30793081 to 30793098 17 + TSS region transcription start site region 28689
Tssr28690 3 30793128 to 30793147 19 + TSS region transcription start site region 28690
Tssr32904 3 30793205 to 30793232 27 - TSS region transcription start site region 32904
Tssr28691 3 30793301 to 30793353 52 + TSS region transcription start site region 28691
Tssr32905 3 30793549 to 30793595 46 - TSS region transcription start site region 32905
Tssr28692 3 30801093 to 30801105 12 + TSS region transcription start site region 28692
Tssr28693 3 30801111 to 30801128 17 + TSS region transcription start site region 28693
Tssr28694 3 30809817 to 30809860 43 + TSS region transcription start site region 28694
D3Dcr1 3 30811631 to 30811726 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 1
Gm38080 3 30828565 to 30828832 267 - pseudogene predicted gene, 38080
Gm42198 3 30841537 to 30851993 10456 - lncRNA gene predicted gene, 42198
Gm42199 3 30852483 to 30855860 3377 - lncRNA gene predicted gene, 42199
Cpgi13044 3 30855572 to 30856561 989 CpG island CpG island 13044
Tssr28695 3 30855730 to 30855758 28 + TSS region transcription start site region 28695
Tssr28696 3 30855946 to 30856002 56 + TSS region transcription start site region 28696
Gpr160 3 30855950 to 30897192 41242 + protein coding gene G protein-coupled receptor 160
Tssr28697 3 30856004 to 30856007 3 + TSS region transcription start site region 28697
Tssr28698 3 30856014 to 30856026 12 + TSS region transcription start site region 28698
Tssr28699 3 30864269 to 30864310 41 + TSS region transcription start site region 28699
Tssr28700 3 30864313 to 30864324 11 + TSS region transcription start site region 28700
Phc3 3 30899371 to 30969415 70044 - protein coding gene polyhomeotic 3
Tssr32906 3 30942443 to 30942487 44 - TSS region transcription start site region 32906
Tssr32907 3 30950923 to 30950939 16 - TSS region transcription start site region 32907
Tssr32908 3 30955219 to 30955243 24 - TSS region transcription start site region 32908
9530022L04Rik 3 30957329 to 30957638 309 - unclassified gene RIKEN cDNA 9530022L04 gene
Cpgi13045 3 30968547 to 30969674 1127 CpG island CpG island 13045
Tssr32909 3 30969399 to 30969425 26 - TSS region transcription start site region 32909
Gm2979 3 30974649 to 30975111 462 + pseudogene predicted gene 2979
Cpgi13046 3 30995356 to 30996365 1009 CpG island CpG island 13046
Prkci 3 30995742 to 31052740 56998 + protein coding gene protein kinase C, iota
Tssr28701 3 30995754 to 30995868 114 + TSS region transcription start site region 28701
D3Dcr2 3 31010839 to 31010945 106 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 2
Tssr28702 3 31017895 to 31017918 23 + TSS region transcription start site region 28702
Tssr28703 3 31038950 to 31038966 16 + TSS region transcription start site region 28703
Mir7008 3 31038966 to 31039028 62 + miRNA gene microRNA 7008
Cpgi13047 3 31056815 to 31057077 262 CpG island CpG island 13047
Gm33641 3 31061302 to 31066692 5390 + lncRNA gene predicted gene, 33641
Gm33694 3 31062428 to 31079942 17514 - lncRNA gene predicted gene, 33694
Tssr28704 3 31076088 to 31076091 3 + TSS region transcription start site region 28704
Tssr32910 3 31079627 to 31079661 34 - TSS region transcription start site region 32910
Tssr28705 3 31091712 to 31091729 17 + TSS region transcription start site region 28705
Cpgi13048 3 31093706 to 31095952 2246 CpG island CpG island 13048
Tssr28706 3 31093892 to 31093907 15 + TSS region transcription start site region 28706
Tssr28707 3 31094017 to 31094050 33 + TSS region transcription start site region 28707
Tssr28708 3 31094666 to 31094688 22 + TSS region transcription start site region 28708
Tssr28709 3 31094694 to 31094712 18 + TSS region transcription start site region 28709